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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0214000.1

TGCTCGGATGGATCATAACTGATGATACTAAACATGTAGGTGAACCAATCACATGTAAATAGTAGTAAAAAATAGACACAAGGAAAGACAAGCATGTGTGTATTCTTTTTTACTTTACACCGCTGAATGCAATGGGCCCTTCGGTTTGATGGTCAAATCTTTGATGCATCAATGGTCGTAGACTATAGCACCACAAACTCTTGCATCCTTATCTCTTCAGTTGTAGGGTGCTCCATCACTCTTGCATCCTTATCTTCTTTTTAAGTAGTACTGTTGCCAACCTGACTATGGACAACTACCTAAAATGTATAATACGGGTTCGGATAAAAATCATAGTTACCACTGCTCCAACAACAGAAATGTACTTAATAATATTAACAATGCGTATATAACTAAGATGAGCACACTTAATCAAAAAATTGCCAGTCAATACATTGATATATTTTTGGCAAAACAAGGCAGGGTTTAATGTTTTGGTTTGAAATTTCAGGAAATTTGTTCCATGATATGAAATTATTTTAGCTAAACGAATTAAGGAAAAAAATAACAATACATTGTTCAAATTTCTTTTTTTTTTCTCAGATCAGAAATTTCTGAACTTCTATCAGTACCCCGAAATATAATCACGATTCGTATTGAGGTGTTTTTCTAATATGTACTTTCTAACTCTGTATGTTCTACTATAAATTCAGTAGATGAGAGAGTTTTTAAGGCATCAGCGACAGAGTATGCTCCTACCTGAAAGGTTAGGTATTGCAATGTAGCACAAATAGTACTCCTATTTAGCAAGAGATTTGCAATTGGGATTCTGCCATTTTATAACAAGTACCTTGGCTATAGTTTTTTTTTTCTTTTTGGGAGAAATACCTGCCTGTAACTTCATGGTCACCCAACATACAGCCATACATGTCCTGAAACTGGAAGCATACAAGCACATGCAAGGGGCGGCAATCAGTTATCATGCACAGTTGAGAATTGCATCGCCCCGGACCAGAAAATCCTTACCTGAGTTACAAACAAGAAAGAAACCAACATGGCAGCAACAATTCCTGACAGGTTTATTGCAATTCATAATAAACAGAAGTATAGAACTTCATGCATAAATTTGACACTGAAGAAAGAATCAACTGAACTACGTAGCATAGGTTGCATGCAAATTCAATTGGTAGTAGACGATTCTGAACATCATATCAGAAATTGCAGTAGCCTACAGAGATGCATATAAAACATCAGGCACATTGATGGATCAGCAGCAAGCATGATTCGATCATTTAATTGGACAGATAACAAAACCATGCATCATAATTCATACTCCTATTAGTTTCGACTTTTTACCAATACATCTGTGGACAGAAAATCTCACCTCCCATCTTTTAAATTTTAGACCGTTGGATGTGCTTTAAGATTCATAAAGAGGCATTAACCCTAGCTCTCCTCCCTTTTCCCTCACGTCGCGCGTATTCAGCCGCCACCCATCCCATCACTATTATCCGCCCGATCCCCCCGCCGCCACCGCCCCACCACGCCGCCGCCCGCCTCGCCGACTGGCCGGAGGGCGTC

Coding Potentia
Explanation CPC Score
noncoding -1.17597
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0214000.1 3 13082835 T C
Osa03LNT0214000.1 3 13081493 G T
Osa03LNT0214000.1 3 13082396 T C
Osa03LNT0214000.1 3 13082753 C T
Osa03LNT0214000.1 3 13081989 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0214000.1 osa-miR529b Cleavage 4.0 13.788 1 21
Osa03LNT0214000.1 osa-miR1429-3p Translation 4.5 24.66 1 21
Osa03LNT0214000.1 osa-miR810b.2 Translation 4.5 16.268 1 21
Osa03LNT0214000.1 osa-miR2101-3p Translation 5.0 15.742 1 22
Osa03LNT0214000.1 osa-miR5076 Translation 4.5 11.09 1 22
Osa03LNT0214000.1 osa-miR5487 Cleavage 4.5 9.454 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0214000.1 3 ccf3b Physiological trait Source activity RM16 RM282
Osa03LNT0214000.1 3 ccfs3 Physiological trait Source activity RM16 RM282
Osa03LNT0214000.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0214000.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0214000.1 3 qGL3-1 Physiological trait Eating quality nan nan
Osa03LNT0214000.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0214000.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0214000.1 3 nan Physiological trait Eating quality RZ574 RZ284
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus