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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0214600.1

GCTCCCGAACTCGTCCCTCATCTCCTGGATCAGGCTCCTGAACGACATCTTCCTCCTCGCTCGATTCCCCCTCCTAATCCACACCTCTCCTCCAATCTCTCAAATCTGCAGGCGAGAGACGGGCCGAGCTAATTTCACCGTAATGTCTCCATGGCGTCGCCGCCCATGCCGGAATCCATCGATGAACACCAACAAGGCACCGAACTGAGCTGGAAGCAAGCAGGGCGGGGACCAAATCCCTCGACGCAGCAAGCAAGAAATGGCAGAAATCCTCACGCGGAGGTAGGTGTCTCCGCCGCTGAATCCCAGAATCAATCCAAGGGCCAAGAAAACCACCACCAGCTCGAAGAAGCAAGAAAACGGCTCGAATTCAAGCTCTCAACCCACCAAACAGAACACCCAACATTTATCCGAAATTGAGCACGAAAATTCTGCAATGGATTCTTGGCTGGAAGGAGGAGGCGGAGGGAGCAAGAACAAGAAGAAGGCAGAGGCAAAGATTCCAAGAAACGAAAGGCGGAGGTGAGGAGGGAGGAGGAGGAGGAGCAGGTGCCTTGGGAATTTTTAGGTGGTGAATGGGTGATTGATAGGTGGTGGTGGTGTAGGAAGGAATGGTTGGGGAATGCCAGTATACTAGTACTACCTATGATTGCTACTACACAAAAAAGGGAATGGAATGGAGATGGAGCTTGAGAGCAGGTAGGATTAGGGTTCCTCCCTCCCTCTTCCTTCCTTGCTGAGTGGCTGAAAAAGATGGGCATCTCACAACTCTCCCTCCCTCCCTCCATGCACACATCCATCTATCCATCCACACATTCATTGTAGCACAATTAATTAACTAAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.722064
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0214600.1 3 13168587 T G
Osa03LNT0214600.1 3 13168847 A C
Osa03LNT0214600.1 3 13169135 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0214600.1 osa-miR169a Cleavage 4.5 17.245 1 21
Osa03LNT0214600.1 osa-miR169b Cleavage 4.5 17.245 1 21
Osa03LNT0214600.1 osa-miR169c Cleavage 4.5 17.245 1 21
Osa03LNT0214600.1 osa-miR169d Cleavage 4.0 17.245 1 21
Osa03LNT0214600.1 osa-miR1850.1 Cleavage 5.0 12.855 1 21
Osa03LNT0214600.1 osa-miR2867-3p Translation 5.0 10.48 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0214600.1 3 ccf3b Physiological trait Source activity RM16 RM282
Osa03LNT0214600.1 3 ccfs3 Physiological trait Source activity RM16 RM282
Osa03LNT0214600.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0214600.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0214600.1 3 qGL3-1 Physiological trait Eating quality nan nan
Osa03LNT0214600.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0214600.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0214600.1 3 nan Physiological trait Eating quality RZ574 RZ284
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus