>Osa03LNT0215700.2

AGCACAAACTAGCCCACGTTCCGGATCAAACTTTACTTAGCTCAATGTCGTCGTGGTATGTACTACTACCAAACAGACAATACATTATACAGCTATTTTTTTTCCTAGCAACAAATCACAGCCGCAGCAGCGTAAGAACATCAGCATCACGGTGACAGGGGGAGGAGAAAGACGGCAACCGGAGGCGGCTAAAACGGTGCCCACAGGCGTCGCCTTTCAGAAGAACCATCACAAAGGAAGAACCGCATACTAACTGACAAACAGGGCATGATGCAAAACACAATGTGCACCAGAAAATGTACATACAACCGCAGCACGGGGTTTGAAGTTGCGGAGGATCAGAGGATGATGAGCACCGGTGGTGGCGCGCTCGCGTTTCTTCACCATGGAGTCTTGTCGCCTGGACCGGCAAGGATGATATTGCAATCTATGGCGAATCGCCGGGTGAGCATGATTGCGGTGTTGCGTTCTCTCGTCGTTTCGAAGGCCAGGACCATGCTGAGGTCATTCCTCGGCCGCCAGAACATCGCCTGAGAAGCTGCTTCACCGCCACCTCGGACACCGCATAGCTGCATTGATGACGAATAGAATTCCTTGGCAACCACTGTCTTTCCTTTAGAAAGCCTCATCCTCAATTTTCCAATATTGAGAACATGAACAGACTCTTTTGGCTGATCAATTCCATTCAACTGAAGCACAACAACATTGAACTCAGTTTCACGTTTCCTTACGAGTGTCTCTACATAATCGACCAATCCAGCGTCAGGGTCTATTGGCCCAGCTGTCTTTGCTATAGCAATTTCACCACCATAATTAATTTCAGCTTCCAAATACCGTCCAACGTCATGTGGTTCGGGAGCATATACTGATCTTGTGGCACCTGAAATAATCTCTTTGTTACTTTCTTTTGGGTGTACACGGAACCACTGGATTGAAATATTTGAGAAATCCATGGTAGTACTGCTCTGAGAAACTATGCGTAGTATTGAGCCTAAGCATTGGAGACCCTCCAAATCAAACAAAGGGATATCATTTCCCTCTGGCCTTTTGTGCAGTTCCAACTCTTTCAAAAGATTAACACAATCCGTGGACCTCTCAACGAACGTCTTACGCAAAATTTTGATCTCATTTTCCAGATCCATTGCCTTGCTGGGGTAATGAAGCATTTTGATTCTTCGCGCCTCTCTAACTTCTTTCTTTAGTTCCTCCATATCTTGCTTTCCAGTTGTTCTGGACATCTTTTCATGTTCCTGAAGTGCTTGTTGAACTCTTTGCACAGAAGACCTAGCACTTTCAATCTCTGTATGAGCACTTGCCCTTTCTTCGTCAACGATTTTTTTGGCATCTTCAGAAGCAAGCTTTAATGATTTTGCTAATTCTGTGACTTCTGCCTTTTGCTGAAGCAGCTCAGCTTCTCTTTTGGAGAGCTGGACAGCAAGAATATCAACCATAGATATAGAGTCCTCAAGTTCAGCCTTAGTTTTGCCTGTCACACGGCCTCTCAGTGACTCTAATACAGTCTTTAGATTCTTCAGAAGGATATCACGCTCCAACAAAGCCACTTGTCTCCATTTAACCTCATTGGACAGCAAAGTGGCAGTATTGAGACCCTTCTCAAACTTCATTGCAAGCTCACGGACTGACAGACGCTGACGATGATCAAGCATATCCGCAGTTTCCTTGGTGACAGTCTCCTTGAGAGATGGCATTTCAGGGCCATCAGCCAGCTTGACTACTATACCATTCAAACCATTTTTGTAGGTAGGAAATTTAGCCCTGATGATGTTTGCAGGACGTAACGGCCCAGGCCGTAAAGTCTCAGTCTGAGCCTTGCCTCCATAATCACGAGTCTGAACCTTGCCCCCATAATCAAGAGTTACTGCCCGGGTCATCTGTAGAATGAAAAACCTCCCGCACGGATCTCCGCGGAGTTCTTGTGCCGATTCGGCGCCGCCAATGGGGATGACGAACTTGAGGCTGGTTTCCCGCGTGGTTTGGGGGATCTTGCGAGGAGGAGGGGTTGGTTACTTGGTTTGCGTCGAGAAGAAAGAAAAAAAAACGCTTCTTTTCTGCAGAGGGAGCTTTTGCTTTCTTCTCCTCTTCTCTCTCTCGTATCAAATGGGGGGATGAGGCTG

Explanation	CPC Score
noncoding	-1.12146

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0215700.2	3	14213509	G	A
Osa03LNT0215700.2	3	14214174	C	T
Osa03LNT0215700.2	3	14215010	G	A
Osa03LNT0215700.2	3	14215587	A	T
Osa03LNT0215700.2	3	14216005	T	C
Osa03LNT0215700.2	3	14216693	T	C
Osa03LNT0215700.2	3	14217572	A	T
Osa03LNT0215700.2	3	14217619	A	T
Osa03LNT0215700.2	3	14217786	A	G
Osa03LNT0215700.2	3	14217861	A	G
Osa03LNT0215700.2	3	14218105	C	T
Osa03LNT0215700.2	3	14218725	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0215700.2	osa-miR6251	Translation	5.0	10.097	1	21
Osa03LNT0215700.2	osa-miR169q	Cleavage	4.5	18.068	1	21
Osa03LNT0215700.2	osa-miR415	Cleavage	5.0	24.214	1	21
Osa03LNT0215700.2	osa-miR440	Translation	5.0	14.072	1	24
Osa03LNT0215700.2	osa-miR1857-5p	Cleavage	2.5	14.984	1	21
Osa03LNT0215700.2	osa-miR1857-5p	Cleavage	4.5	16.713	1	21
Osa03LNT0215700.2	osa-miR1860-5p	Cleavage	5.0	23.896	1	21
Osa03LNT0215700.2	osa-miR2907a	Translation	4.5	23.033	1	22
Osa03LNT0215700.2	osa-miR2907b	Translation	4.5	23.033	1	22
Osa03LNT0215700.2	osa-miR2907c	Translation	4.5	23.033	1	22
Osa03LNT0215700.2	osa-miR2907d	Translation	4.5	23.033	1	22
Osa03LNT0215700.2	osa-miR5519	Translation	5.0	16.321	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0215700.2	3	nan	Morphological trait	Root	RM338	RZ284
Osa03LNT0215700.2	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0215700.2	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0215700.2	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0215700.2	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0215700.2	3	qDLR3	Resistance or Tolerance	Other soil stress tolerance	RM338	RM2453
Osa03LNT0215700.2	3	qGL3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0215700.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0215700.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0215700.2	3	nan	Physiological trait	Eating quality	RZ574	RZ284

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus