>Osa03LNT0215800.2

CAAAACTTTGCAATGTTAGAAGCAAAGTTGGTGATGGCCATGATCCTGCAGAAGTTCTCCTTTGCTCTTTCGCCAAAGTATGTCCACGCACCTGATACCTTCATTTGCTACTTGATGTTGATTGTGCCATGACGTCCTACTATCTGCATGGCGTCATGCATGACCTCATCTTCTGTATCTCCTGTACGATTTCAATTGCATACATACAAACTAAAAAAATGTCTCTACTCTGAAAGTGGCCGCACAACCCAAAAAGACCAGGTAAATGCATACGAGAAATTTGTAAAGTAAATAATTCTCTGTTCCATTATTTTTCTTCTAGAAAAAAGGCAGCAGGATCTCTGCCCCAATATTTGAGATAGAAACAGCATGGATTCTAAACTGAGATTAATACACAAGTAGGCACTGTACGGTGTACGATTAGAAAAAACAGAATGCACAAGAGAACAGAGTTCTTCCCCAGTTCTTTAATGACATAAAACACAAACTATGAAGCTAGAAGGATGTGCAACAAGGCAAAACCTGGTTCTGGTGTTTCCATGTAGTTATCCTCGATGTCACTCTTACAGCTTCATCTTCTGATTGCCATAGCCTCAAAGGTCGTATCTCCTCTTTCACACTCCGGCGTGGGCGATCGAGAAGGATCAACCACCACGGGGCCGCTCCATTGCCGGCCCTCGACCGCTGCGCCCCTTGCTGTTGGGGATGTAGCGCACCTTGCCCAGCCATGTCAGACGCGCCTCGCCGGGCGGCTACCACCACCATCACCAGCCGGCCGGCCGGCCAGCTCCAGTCCCCCGGCGCCCGGCATCCTACTGACGTCGACCCCCCTCCCGACGACCCGACCGCCACGCGCGCAGCGGCGCGGCGGCGGCGGCGAGAAATCAGGTTGCTTGGGTCATCAGTTCGGCACGATGACGGGGAAAGGAAAAATCGATTTGACGCCTTGTGCCGCGGAACAAAT

Explanation	CPC Score
noncoding (weak)	-0.341358

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0215800.2	3	14556731	C	T
Osa03LNT0215800.2	3	14556993	A	G
Osa03LNT0215800.2	3	14557430	A	G
Osa03LNT0215800.2	3	14557495	A	G
Osa03LNT0215800.2	3	14557648	T	G
Osa03LNT0215800.2	3	14557661	T	C
Osa03LNT0215800.2	3	14558671	T	C
Osa03LNT0215800.2	3	14559200	G	A
Osa03LNT0215800.2	3	14559203	C	T
Osa03LNT0215800.2	3	14559366	A	G
Osa03LNT0215800.2	3	14559943	T	C
Osa03LNT0215800.2	3	14560163	C	T
Osa03LNT0215800.2	3	14560525	G	A
Osa03LNT0215800.2	3	14560592	T	C
Osa03LNT0215800.2	3	14561154	G	C
Osa03LNT0215800.2	3	14562130	C	G
Osa03LNT0215800.2	3	14562378	G	A
Osa03LNT0215800.2	3	14559120	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0215800.2	osa-miR5150-3p	Translation	3.5	15.217	1	24
Osa03LNT0215800.2	osa-miR5494	Cleavage	4.0	17.628	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0215800.2	3	nan	Morphological trait	Root	RM338	RZ284
Osa03LNT0215800.2	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0215800.2	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0215800.2	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0215800.2	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0215800.2	3	qDLR3	Resistance or Tolerance	Other soil stress tolerance	RM338	RM2453
Osa03LNT0215800.2	3	qGL3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0215800.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0215800.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0215800.2	3	nan	Physiological trait	Eating quality	RZ574	RZ284

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus