>Osa03LNT0216000.2

CTCTCGAGTATATACCGATTTTAACTCCAGGTACATTGTTTGTATCAGAGAAAAAAAACTGTTCTTATTAACCAACAAAATAACCTCCAGATGATGAGTATGAAAAGCAGAATTGAGACAACTAGTAATCCTGACTTGAGTTCTTACATTAACAATGCCTGCTCGCCAATGGGGAAATCATTGGTAACGTTACAGGACCACAAAAGGCAATAACCAGTCACTTAAAATGGGCACGAGGTCAAAGAATATGATAAGTTGTTCGATGCTTCGACTTTTTATCTTCAGGATCCAACAATGAAAAGGAAATCCTAGAAGACCACACATCATTAACATTCCTAGAAGATCAGGATGGCCTAAAAATTCCGAAACATGGTTCAACCTAGTAACAAGAAGCAGTCATCATCGAAACATGGTTCAACCCAGTGCCCCGTTGGCATTTGGGTCCTAAGCTCCTCACCGGCTAACAGAAAGAGACCTCTCCCTGTCAGGTGACTTGCTGCGGCGGTCATCAGAGAGGCTTCTACTTCGTGATCTGCTGTCCGCTGGTGAGCGCGACAGAGATCTCTCCCGACGGGCAGGAGACCTTGAATAGTGCTTTCTCTTAGGTGCAGGTGAGTAGCTTCGACTACGGGACCGTGATCTTGGAGAGTACACAGGTGACCTTGAGCGGGAGTATCTAGGAGAGCGCGACCTGCGATCATAAGAACGGTCCCTGCTACCGACTCTTTCCCTAGCCCTCATCTCAGATGGTTTCTTTCTGTTCTCCTCAGCAAATACAACAGTAACTTCCCTGCCAAGAAGAATTTGCCCATCCATGTGGTATTTTGCATCAGCAGCATCCTCAGGATCATAATATTGGATGAACCCAAATCCTCGAGGCTCCCTGTTACAGATAACAAGATTTAGCTTTAATTAATTGCACAATTCTGAACAGTATACAAGAAAATCCTGAAAAGGATACTTGACTTTAGTCAAGTAAAGGAACAATTGATTATTCATATCCTTGAACCTTGATTCCTTTCCCTGGATGTTGATACACAAATTTTTCAACAGATAAAGCAAGCACTAGGCTGCTGACCTTGTACTCATCAGAGTTTAAAGATAGACTTGAAACTCTTCATAACTTGCATATCTCTTATACTCTATTTCTTCCCTTCTCTTCAACAGAGTACTCTTAAGGCTTGTGTCTTCAAAAAATTATTTTCACAGTTAATCTTAAGAGGTGGGCAAAAATCATTCAATTTAGGTGTACCAAATGTACTAAAGCACAAACAAACATTTCCAAAGCACATGTTTAAGCCAATTGCAAATGAATCCAAAAATAGCATATTACTGGATTGAAAAAATATCACAGCATCCTAAACATCTCATGGTTTGATCCCTAAACAGCATGTAGGCCTCCAGTTGAAAATGAACACTGGCTCTATTTGAGTTGAGGTGCCTTACCCAGTGTAATAATCTCTTGGAAGATATATATCTTTGACACGACCAAATTTTCCAAATGGTCTTCGTAGATCATCAGGCCTACAGTCACGGCGAAGATTCCTCACCAAAAGACTAGTTGGGAGATCCCTGTCACGGCCTCCATAGCGCCCACGAGGACTTGGGCTGCGGGCTCTTCTCCTGTATTCTCTTGGCGGTGATGGACCATAATCATAGCCTCTTCCCATAGTGATCTTTCCCGCCTAGGGCTTGGAGGCGCTTCGCCGCTCCTGGGTTCGTCGCCTCCAGATTTCCAGAAGCTTCCGGATGTTGCGCGGAGGGGGAGGGAGAGGAGGAGCGC

Explanation	CPC Score
noncoding	-1.20742

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0216000.2	3	14751804	G	C
Osa03LNT0216000.2	3	14751950	T	C
Osa03LNT0216000.2	3	14753373	C	T
Osa03LNT0216000.2	3	14753927	C	A
Osa03LNT0216000.2	3	14754442	G	C
Osa03LNT0216000.2	3	14754555	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0216000.2	osa-miR5832	Translation	3.5	11.693	1	21
Osa03LNT0216000.2	osa-miR2092-5p	Cleavage	5.0	18.303	1	21
Osa03LNT0216000.2	osa-miR2103	Cleavage	3.0	24.117	1	22
Osa03LNT0216000.2	osa-miR2275a	Translation	3.5	15.145	1	22
Osa03LNT0216000.2	osa-miR2275b	Translation	3.5	15.145	1	22
Osa03LNT0216000.2	osa-miR2863b	Cleavage	4.5	22.538	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0216000.2	3	nan	Physiological trait	Eating quality	RZ574	RZ284
Osa03LNT0216000.2	3	nan	Morphological trait	Root	RM338	RZ284
Osa03LNT0216000.2	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0216000.2	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0216000.2	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0216000.2	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0216000.2	3	qDLR3	Resistance or Tolerance	Other soil stress tolerance	RM338	RM2453
Osa03LNT0216000.2	3	qGL3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0216000.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0216000.2	3	qTA3	Physiological trait	Eating quality	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus