Transcript

Sequence

>Osa03LNT0216100.1

GGGAGGGAGGCGGGGCGCGCGGGGTCGGACCAGGCGGCGGCGACGATCTGCGCGACGCCGATGTTGCTGCAGTTGCGGCGGGCCTTGGTGCTGAGCTGGCGGACGAAGTTTGGCGGGAAGCGGAGGATGGTGGCGGAGGGGAGCGCGGCGGCCGGGTCGGCGGCCAGGAACGCCGGGGACGGGAGGGAGGAGACGGTGGCCATGGCGAGGAGGAGGAGGAGGGCTAGGGTTTGGGCGGGCGGCGCGGCGGGTCGCGGCGGCTTCAAGGGGGGGGGG

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.647303

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0216100.1	3	nan	Morphological trait	Root	RM338	RZ284
Osa03LNT0216100.1	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0216100.1	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0216100.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0216100.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0216100.1	3	qDLR3	Resistance or Tolerance	Other soil stress tolerance	RM338	RM2453
Osa03LNT0216100.1	3	qGL3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0216100.1	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0216100.1	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0216100.1	3	nan	Physiological trait	Eating quality	RZ574	RZ284

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus