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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0216800.1

ACATACTAACTGTAATTATATCAGACTTTTGATTTTACCTTCTGAATCGGATCATGTGGGTCAAAGCAATCAATGGTATTTGATCTGTTCATCTCACTGATCACATTCTTATAAAAATCAATTGTGCCAGAAAAGGAACAAATTTGTATTTAGGAGACTGGTGGCTGGAGCTCGCTGCTGTCGATGTTGCATTGCCGTTCATCTTTGATGGCCTGCATTTTTTTTTTCAAATATTCAGGTAGGACATGGCTACAACTGCTGAGAACCACCGTCCTGCTCAGGTGCTCTTTATTGGATTGTAACTTTGAAAGTGCTAATTAACAAATACAATCACTTGCTTGAAGCAGATGATCTGCAAACTGAATCATGTACTCCTGATAAAATCAAAAGGATAAAAATGTCCAGCTCGCTTCGATCCTTTTCTTATTTATTCCACCCTGTAATTTAAACTGGAAACACATATCTGAAGTCAATTTGGACTGTGGGGACTGGTGTCAGGTCCTGCGTAGCTTCAGTGTGAAGGAGGATGGACAATGCAACAAAGGAAATCCGGCATCCACTGGAGCAAGGTAGCATCCAAGGTTGGGTCATGGGCGTGGATACATGCACTTGAAACGTAGTGATAATCTGCTTGCTGTCTTGACTGTTCCAACTCTCTGCGTTTAATTCAGACCTAAAAGGCATCCATTACTCTTTTGGAATCACAAATATGTCATCCGATGAACTGTGCAGGATAAGAGAATGGAAACTGGGGGTGATGGCTGTATCCATGAATCCAGCTCAAATTCCGCCCAGAAGTCCTCCGCAAACGTGGCGCAGCGCGAGTCAATCACAACCTCGGTTCCAACTTTGAAGAGGAATGATGGGTCGGCTAACATTCGGTTGTGGAGCATCGAGAATGCCCGGATCATCGCGGCTAGAGGCCATGGTGCTGCCTGCAGATCGAAGTAGCGGAGCAACAGGACTTCCCAGATGCCAGCATCCTTGGCCGCCTCCATATCGGCCGGGAGCGAGACACCGCGTGCCATGGCTAGGCGCAGCACCTCATCGAACCTGAGCAGGGGCCCGAACTCGGCCTCCTCACAGTCGTCATCGTCGCTACCGCCGCCGCCGCCGCTGCCCTTGCCGCTATTTCCTCCGGAATCGCTCCCGTGGTCCCCCGCGCCTGATCCGTCGGTGGTGGTGGCACGTGGGGCTTGTGGCCTGGAGCAGGAGAGGGAATGGGGTTTGGGGGGCAGTGGGGAGAATAACCTGGAGGAGAGCTGGTGGAGGGGTCTTAGCTCGTGAGAGGGATTTGATGGGGAGGAGGAGGAGATCACGGCGGCAGCGACGGCGGAGGCGAGGGAGGGGAGGCGGCGGAGGCGAGAGAGGAGAGGGGAAGGGGCATGGCGCTAGGGCTCCC

Coding Potentia
Explanation CPC Score
noncoding -1.17706
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0216800.1 osa-miR5813 Translation 5.0 17.691 1 22
Osa03LNT0216800.1 osa-miR171g Translation 4.0 18.829 1 21
Osa03LNT0216800.1 osa-miR171h Translation 5.0 18.542 1 21
Osa03LNT0216800.1 osa-miR1850.2 Cleavage 5.0 19.594 1 21
Osa03LNT0216800.1 osa-miR1846a-5p Cleavage 3.5 22.841 1 21
Osa03LNT0216800.1 osa-miR1846b-5p Cleavage 3.5 22.841 1 21
Osa03LNT0216800.1 osa-miR1846c-5p Cleavage 3.5 22.841 1 21
Osa03LNT0216800.1 osa-miR2094-5p Translation 5.0 17.856 1 21
Osa03LNT0216800.1 osa-miR2097-5p Cleavage 4.5 13.676 1 22
Osa03LNT0216800.1 osa-miR396f-5p Cleavage 5.0 17.507 1 22
Osa03LNT0216800.1 osa-miR396f-5p Translation 5.0 24.512 1 22
Osa03LNT0216800.1 osa-miR2118b Cleavage 5.0 18.625 1 22
Osa03LNT0216800.1 osa-miR2118d Cleavage 5.0 18.625 1 22
Osa03LNT0216800.1 osa-miR2118e Cleavage 4.0 18.625 1 22
Osa03LNT0216800.1 osa-miR2118g Cleavage 5.0 18.625 1 22
Osa03LNT0216800.1 osa-miR2118i Cleavage 5.0 18.625 1 22
Osa03LNT0216800.1 osa-miR2118n Cleavage 5.0 18.625 1 22
Osa03LNT0216800.1 osa-miR2118o Cleavage 5.0 18.625 1 22
Osa03LNT0216800.1 osa-miR2118p Cleavage 4.5 18.625 1 22
Osa03LNT0216800.1 osa-miR2118r Cleavage 4.0 18.625 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0216800.1 3 nan Physiological trait Eating quality RZ574 RZ284
Osa03LNT0216800.1 3 gw3.1 Morphological trait Seed RZ672 RZ474
Osa03LNT0216800.1 3 nan Morphological trait Root RM338 RZ284
Osa03LNT0216800.1 3 ccf3b Physiological trait Source activity RM16 RM282
Osa03LNT0216800.1 3 ccfs3 Physiological trait Source activity RM16 RM282
Osa03LNT0216800.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0216800.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0216800.1 3 qDLR3 Resistance or Tolerance Other soil stress tolerance RM338 RM2453
Osa03LNT0216800.1 3 qGL3-1 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus