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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0217200.1

ATCAGCCACCAGTTAGCCCAGTTCACCACTCCACGGCTTAGGTAGGCTCGCGGCCTGCTCCCGCACGTCGCCATGGCACCGTCGTCCTCTGCACAAGCCGCCGCGTCCACCCTCTCCCGAAGCTCCCCACGGCCAGGATAGGATCTGGCCATAGGAGGGGAGGAGCTCCACGAGATGGGCTTTTTAAGCCGGCTGGGAGAAGAGACGTCGCCGCCGCCAACCGCTTCCCCGTGCACACAGGCCAGAGAAGCAGCAGTTGACGCACGTCCGCGAGCCGCAGCCACCGTCACCGCGAGGTCCTCGCGCCGCGGTCGCCGCCGCGCGGCCCTCGCGCCGCGGCCGCCACCGCCTCCTCCTCCGTGCGCCCCTCGCACCGCGGTCGCCGCCGCTATCGCCTCCTCCGCGTGGCCCTCGCGCCTCGGTCGCCGCCACCGCAGCCGCCTCCTCCGCGCGGCCCTCGCGCCGCGGCCGCCACCTTCGCCGCCGACCCGCGCGTCTAGCCTAGATCCAGCCAAGGGAGGGCCGGATCCGAACTCAACGGCGCCGGATCTGGCTGTCCTCGCCGAGTTGCGCCCCTCGTGCTCCGGTCTCATCGGCGCCCCCAACCACTTGACCAGGAGTGAGGGGAAAGGGGAGCCCCGCCGCCGCCGTCTTTGCAGCTGCTCGGGCGGCGGCGAGGCGTGGGAGAGGAGGGGAAGGGAGGGGGCGACGGTGAGGTTTCGCCGCCCACGTCGCCCCTGGGGCGGAGCGACCGGGCCACCTCGTATCTTTTTTTTATTTTTTTTTCTTTTACTGAAAACAATTAAAACCATTTTTTGCAGAAACATCCTGGAGGTGGTAACCTACCTGTTGTCCAAGAAGGAGATTGCCCGTGCCAGTGGAAACTGGAGGCAGAAGAGGCTCCATGGCTCTTTTGTTTTGCATGAACTCAGCTTGTGATGCTCTGGATGCAGCTCCACCAACCTCATCCATCCCCAAGTATCCCTGATCGATGTGCCAGTTTGGAACAAGAGAAAATTTCACACATTGCAGATATTGCTATAGAGTAAAGCTCAGCATTGCCCATACCTGAGCAACTATTGTATCTGTACGATTTCCTTCACAAATATCGTGGCCCCCTTTTGAGCTGACTTTACCATCATTTAGTTGAGTAACAAATGATTCCTCCAATGAGTTAATATACAGCATGTGCTTTTCGTCTGTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0768469
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0217200.1 3 15969044 T C
Osa03LNT0217200.1 3 15969721 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0217200.1 osa-miR5528 Cleavage 4.5 8.515 1 21
Osa03LNT0217200.1 osa-miR1868 Cleavage 4.5 21.874 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0217200.1 3 nan Physiological trait Eating quality RZ574 RZ284
Osa03LNT0217200.1 3 gw3.1 Morphological trait Seed RZ672 RZ474
Osa03LNT0217200.1 3 nan Morphological trait Root RM338 RZ284
Osa03LNT0217200.1 3 ccf3b Physiological trait Source activity RM16 RM282
Osa03LNT0217200.1 3 ccfs3 Physiological trait Source activity RM16 RM282
Osa03LNT0217200.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0217200.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0217200.1 3 qDLR3 Resistance or Tolerance Other soil stress tolerance RM338 RM2453
Osa03LNT0217200.1 3 qGL3-1 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus