>Osa03LNT0217400.2

ACAACAACAACAATAATAATATAATAATTAACACATATGATGTGTGCTTATTCAAGCTAGAACACTAGCTTAATTAGGTGGCATCTTTGTAATTATTAGTAGCAGCAGCAGCAGCAGCAGAATAAGAATTATTTGGAAGAAATTACATAATTCGCAAACAGGAACTACGTACCCTTTAATCTTCTCGTATTTTATATATGCATATAGATGTCAATCTTTCACATGCGACCGTTTGAGGGCCGTCGCCGTCCTCCTCCATCGACATCAGCATCCTAGCTTTGCATGGATATCTCTCTCTATCTTTCTTTGATCTTTTGCTTCCTCTTTTGGAGGAATCGCTGCAGCGACGCCTTCCTGGCGATCGGCATCACGCCGCCGGCGGAGACCCCCGAGGCAGCCGGCATCTGCGGCGGCGGCAGCAGCATGGGCGGCTCGTCCGGCGGGGGAGTCACAACGGTGACATTATTGTTTTTGTTCCCACCGCCGCCGCCGGCGGCCGCAGCCAGCAGATGCTGCGTGCGCTGCACCAGCTTCTCGGCCGCCTCCGCCGTGTAGTGCTCGAACACCAGCACCTGGCCGCCGTAGACGATGGTCAATGGCGCCGTCGGCGCCGTCGCCGGCACCGACGGCGTCACATGCACTTCCGGCCGTCGTCGTTCTTGGGCCGCCGCCGGCGCCGGAGCCGGCGACACGACGACGCCGTCTGCGGATCGCGTGGGGAAGAGCTGCATGGTCCGGGCGTCGACGACCATCTTCTCCTTGGCCTCCGCCGCCGCCGCCGCCGGCCAGATCACGGCGCCTCCGGCGGCGGCCTGCTGCTCCGGCGCCGTCGTCATGCACGGTGGCTGCGGCGGCTGGCCGCGCCTGGCGGCGGCGGGGAGCATGGCGCCACCGCCAGCTGCGCCGACGGCGTCCATCTCTCGCGTCCGGCCTTTCTCCTCCTTGAACGTACTATACCTAGCTAGCTTACCATCTCTTGTGTTGGCGAAGCTGCGTGGGTTCCGGGGATGGGACGACTGTTCGTACGGTACGGTGTGGGGGTGGTTTTTCTTTTCTTTTGTTTTCTTTGGCGCGGCTCTCTCGCGGTCCGGATTAAACCTTGCCGTGCATGTATGCGCGCGCACAGGGGGCACGTGAGAGTGCTATCCTATCCGAACCTCCATCGATA

Explanation	CPC Score
noncoding (weak)	-0.772892

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0217400.2	3	16024706	A	T
Osa03LNT0217400.2	3	16024945	C	A
Osa03LNT0217400.2	3	16026033	C	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0217400.2	osa-miR5526	Translation	4.0	11.064	1	21
Osa03LNT0217400.2	osa-miR156k	Cleavage	5.0	15.366	1	21
Osa03LNT0217400.2	osa-miR415	Cleavage	5.0	18.578	1	21
Osa03LNT0217400.2	osa-miR5152-3p	Cleavage	5.0	15.546	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0217400.2	3	nan	Physiological trait	Eating quality	RZ574	RZ284
Osa03LNT0217400.2	3	gw3.1	Morphological trait	Seed	RZ672	RZ474
Osa03LNT0217400.2	3	nan	Morphological trait	Root	RM338	RZ284
Osa03LNT0217400.2	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0217400.2	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0217400.2	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0217400.2	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0217400.2	3	qDLR3	Resistance or Tolerance	Other soil stress tolerance	RM338	RM2453
Osa03LNT0217400.2	3	qGL3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0217400.2	3	nan	Morphological trait	Shoot/Seedling	RZ284	RZ403
Osa03LNT0217400.2	3	nan	Morphological trait	Panicle/flower	RZ452	RZ284

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus