© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0218200.1
TTTGATGGCAACTGGAAAGGAGGAATCTCCTCTTCTTTTTTTACTGTACATAGTTCTTTTATGTACTCTTTCAACTCTTGAAATCAAATGGACAGTGCTCAGATGATTTCCATCTTATAGGTTTTTACAGACGGCCGATATCAAAACATCCACACAAGGGTCTTTCTTGAACTATTGTATACAAATATATGTGGTGCCCATCCTATACAGTAGAATTCTATGCACATTTCAGCATTTGGTCCTACCTCAGTCAGACCCGCCGCAGCACAGAGAGCAGCACTCGAAGCATGCGAGGCACGAGAGCGCGCCGCACAGCTGCACCATGACGATGGCGCACCGGTCGTTCATCTTGCTGCAGGTGTTGATGAAGCACATGCAGCAGCAGCAGTCCGTGAGGCGGCTGCAGCAGCCGACGGCCTTGTCGAACATCTCGAACCTCTCTGGTGGTTTCGTGTCCCCGAACCCAGCGGAAAGGTTCTCCCTCGTTGCAGCTGTGTCACCGAACCCGAGCGTCAGTCCGTTGAGCGACGTCGCTGATTGCTCATTCTGGGTGCTGTTTTTCTTTGGCTTCTGCTTTCCCTGCACAAAAGGCGGTGAGATTCATTAGATTCTAGGAGGGGATTCACTGCGTCGGCGGTTGAAGTCGAACATTTGGTGGAAGATTGTGGTTAAAAAAAAAAACCTTCAACTTAAGAGTCTCATCTAGGGTTCTGAAAACTGGCCAATTAAAAATATGTTCCCAATATTAGCAAACTAGCAAAGCTAAATGGTTACAATAATTATCCTTAAACATGAAAGTTGAAAGCTTGTTCATAGAATTCAATCATATATTATAGATCACAAAGAATCCACTGTACTCACCTGTTGCCATAGCTGAAAAACATGTACAAAACACCACCTTCGGTGACAAATACCTGTTTTGGATAAGCATCCATCGGAACGTCTGAATTTCAGGGCATTATTACATTTTTTAAAACTCTTGACTGGCTAAATGAAAATGATGTGTAGATTTGTCTCAAAATGTGCTTTCATAATATTATAACTTTACGGATTTTACAAATATATTAGGATATATATGAGTGTCAAAATTATTGTTTGGAAGATGGGTCAATGTCCAAAGCAATATGTATTTGTGACCGGAGGGAGCAATTGTACCAATGTTCTCGCACAAAATTTTGGTCTTAACAAGTTGAATAGCCCACTTCTTATAATTTTTGAAACGGAATAGCCCATAACTAAATTTTTATCTGCAAGAAAACACTAATGTATGACTTGTAGAAAATTCTCAAAAGAAGTTGTACCTGTTCTATTTTTTCCACGAAGTTTTGAAGTAGGATAGTGCGTGTGTACTCCGAAGGAATGCTGTTTTGTATACTTAATTTTACCACCTAATAATTAAAACAAAGAAGAGTGTCAGATAGATCTCAGAAACAAGGTAATCCGGACCATGGAGCAGGAGTTACAAGTAGAAACCAGCATATATCACACTTCATTCCAATACATACAGTATCTCAATTGCATGCTGCAAAGCCCAGTAGTATGCAAGCAGGCAAAGATTACCTCATAATGCAGATTAAGCATAACTTTATAGCTCATAATGCAGTGGACTGTGGTAAACCTCATTCCACTCTAGACAAGAATTAAACAGAAATAGGTCCAGGAAAAAGGTTTAGAACATAACGATTGCAAACTTGTAATACCAAAATAACACAATAATGAAAGGAAGGTACTATGATTGTTTGCAAAGCATGGTTAGAGCTGTTAAACTTGTCAAACCATCAGACTGTACATGAAGCTTGACATAAGTCATTAACTCATCCAAATATGACTATTTGCGAGGCATAATTAAACTTGTCAAACCACCAGACAGAATATAAGTTTGATATAAATTCTGTACAGAGGGACTTGGATATAAATTTATCCAACTCACAGAACTTAAGAACGTCAAGCCACTAAACAATGGGATCAAGCATTATCCCAGAACAATTACTTTACCTTCATCTCTAGTTGATTGTTTTCATAAAACCATGCTTTTGCTGTGAGAAGATCCATCTGCTGCTTTGCTAACACTTTGTCAAGAGAAATATCCTTTACATGTTGGACCCTCAATTCAATCGATATTTCGCTCATGTCAGCCAAGTAACCCTTGGCAGTAAGTGTCTCTGGAAGCTTGCCTTGGTATCTCCCAGACACACATAGTGGGCATTTTGCAGAAATATCTTGAATATATTCAGAATCCACTTCAAATTCTCGAATGTACTTAGTGGCATCAATGGAAATATTTATCACTATTGTGCTTGAAGCTTTCTGAAACCACTGAACCATCCGACCCTCAATTGATCCTGTATCAAATGCAGCATCATAATGCCCCTTGCCAATGGATGCCAACATCCTCAGGAAATAGTGGTTGCAATAAGAGCCTAATGTTTTCGCAGTGAAAAAAGAATTAATTATAAAATGCACCAACTAGTCAAATTACAAGCGTGTAAATATCATTTCTGAAATGAATATAGAGAATGAAACAACACTATGGGAATGCCTCTTAATTAGCTCCACAAAAACTAACTGTACTGAAGAAACTAATAAACACATAAGAGAATATGCTAACTTTTATGTATATCACAATTTAGAAATTCCCATTTACATTGAAAACTTTGAATGAAGATACTACTTACATCACCACAAATCAGCTGATATTTCATCCAGTACATAGATTAGTCAATCTTGTGAAGAGGTCAGTAATAAAAAGAAATAAATAATCTGGCATGTTACCTAGTCCAAAAGTAGAAATCCTGGGGGACTTAGATCCTCTAGTTGCGAGCTGTTCTTTCACAGTGCGGCAAATATTCCGTTCATCCTCAACAGATCCATCAGTCACAAGAAAGATTTGTGGAAGTGCATTGTGAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0218200.1 | 3 | 16696473 | C | T |
| Osa03LNT0218200.1 | 3 | 16697337 | C | A |
| Osa03LNT0218200.1 | 3 | 16697757 | T | C |
| Osa03LNT0218200.1 | 3 | 16698473 | T | G |
| Osa03LNT0218200.1 | 3 | 16698667 | A | T |
| Osa03LNT0218200.1 | 3 | 16698809 | G | C |
| Osa03LNT0218200.1 | 3 | 16700140 | G | C |
| Osa03LNT0218200.1 | 3 | 16696511 | A | G |
| Osa03LNT0218200.1 | 3 | 16697417 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0218200.1 | osa-miR5526 | Translation | 4.5 | 16.115 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR5540 | Translation | 3.5 | 16.482 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR5543 | Translation | 4.0 | 17.775 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR6250 | Cleavage | 4.5 | 11.868 | 1 | 22 |
| Osa03LNT0218200.1 | osa-miR171a | Translation | 4.5 | 12.154 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR399a | Cleavage | 4.5 | 22.193 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR399b | Cleavage | 4.5 | 22.193 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR399c | Cleavage | 4.5 | 22.193 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR399i | Cleavage | 4.5 | 22.193 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR399k | Cleavage | 5.0 | 22.193 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR166g-5p | Translation | 4.0 | 18.829 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR390-5p | Cleavage | 5.0 | 21.042 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR396e-3p | Cleavage | 2.5 | 11.444 | 1 | 24 |
| Osa03LNT0218200.1 | osa-miR1847.1 | Cleavage | 5.0 | 19.921 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR1860-5p | Cleavage | 4.0 | 19.817 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR2093-3p | Cleavage | 5.0 | 15.48 | 1 | 20 |
| Osa03LNT0218200.1 | osa-miR2099-5p | Cleavage | 5.0 | 12.333 | 1 | 22 |
| Osa03LNT0218200.1 | osa-miR396f-3p | Cleavage | 1.5 | 11.444 | 1 | 24 |
| Osa03LNT0218200.1 | osa-miR2863b | Translation | 5.0 | 10.172 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR5081 | Translation | 4.0 | 12.213 | 1 | 22 |
| Osa03LNT0218200.1 | osa-miR5487 | Cleavage | 5.0 | 14.073 | 1 | 21 |
| Osa03LNT0218200.1 | osa-miR5490 | Cleavage | 5.0 | 18.554 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0218200.1 | 3 | An5(t) | Morphological trait | Panicle/flower | C1677 | R19 |
| Osa03LNT0218200.1 | 3 | gw3.1 | Morphological trait | Seed | RZ672 | RZ474 |
| Osa03LNT0218200.1 | 3 | qGL-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0218200.1 | 3 | qLWR-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0218200.1 | 3 | ccf3b | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0218200.1 | 3 | ccfs3 | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0218200.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0218200.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0218200.1 | 3 | qDLR3 | Resistance or Tolerance | Other soil stress tolerance | RM338 | RM2453 |
| Osa03LNT0218200.1 | 3 | qGL3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0218200.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ284 | RZ403 |
| Osa03LNT0218200.1 | 3 | nan | Morphological trait | Panicle/flower | RZ452 | RZ284 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
| Transcript ID | Chromosome | Locus | Trait | Value | Plus Minus |
|---|---|---|---|---|---|
| Osa03LNT0218200.1 | 3 | 16696465 | Grain-length(mm) | 24.05810928 | + |
| Osa03LNT0218200.1 | 3 | 16696853 | Grain-length(mm) | 10.04360867 | + |
| Osa03LNT0218200.1 | 3 | 16697111 | Grain-length(mm) | 12.72687912 | + |
| Osa03LNT0218200.1 | 3 | 16697605 | Grain-length(mm) | 23.90498352 | + |
| Osa03LNT0218200.1 | 3 | 16698018 | Grain-length(mm) | 9.208557129 | + |
| Osa03LNT0218200.1 | 3 | 16698457 | Grain-length(mm) | 8.969764709 | + |
| Osa03LNT0218200.1 | 3 | 16698667 | Grain-length(mm) | 9.422000885 | + |
| Osa03LNT0218200.1 | 3 | 16698809 | Grain-length(mm) | 24.00469971 | + |
| Osa03LNT0218200.1 | 3 | 16699633 | Grain-length(mm) | 8.953370094 | + |
| Osa03LNT0218200.1 | 3 | 16699913 | Grain-length(mm) | 22.73287582 | + |
| Osa03LNT0218200.1 | 3 | 16700094 | Grain-length(mm) | 9.363986015 | + |
| Osa03LNT0218200.1 | 3 | 16700638 | Grain-length(mm) | 9.833414078 | + |
| Osa03LNT0218200.1 | 3 | 16700676 | Grain-length(mm) | 23.27470398 | + |
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)