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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0019500.2

AGTTCAATAATACTCCTATGTACAGTCCACATGTCAAAGCCCAACAGAAAAGCCCACCTAGACCACCTTCTTCCTCTTCTCTCTTTTTCTCGTTCTCCCCTTCTCTCCCTCACGTTCTCTCCAGCGCCGCCGCTTCCTAGGCAGCGCCGGCGACCTCCCCTGCGCCGGCTGCCACACCCCACTCCGGCGACCCCTCTAGCCGTCGCCGGGCTGAATCAGCTTCTTGGCTCCTCACTTCTCTGCCCCTAAGCTAACCCTAGCCTCTGACCTCTTCAACCTAAGATGCAACCGGCGGCCAATTCTGGCGAGATAAGGATTTAGGGAAGTTTCCCAGGCCCCTACCGCTGGATCTACTCTCCTCCCCTATTTTAATTTTTGGTTACCTCTGATGATTCTACCGTGATTGAAAAATATGTGGTTCAGCTCCTCCTTCAGAAATCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTGATTTTGCTAGAACTGAGCTTCTCCACCTTGAGCTTGGTTGATTGTTCCCCCTCTTGAACTGAACCCCCTGCTCTACTTGGAACTCAGGTAATTCTCCTCCTTGGCTCTTGCTCTACTGGTAATACTTGACTGCTTCCTGACAGGATCTGCTACTGATTTGGTTCACCACTCTCTGATTGCTTGGCCATGGTTACTACTACTTGTTGATTCATGTATTGGTTTGAGCTGGACTTCAGTTGAGCTATTTCTGTCCGGGTGGAGCTAACATTCTAGCTGATTTTCCTAAGCTTGGTTCTATGATTCTAACTACTACTGCCGCAGCTGCTGCTATTGCTCTACTGCGGTAGGTGCTTGAGGTGGTTTTCCAGCCGATGCAACCGAGGCTGGGGTTCACTGAATAGTTTGGTTGATATATATGTGAATTTGGTGAAGACTAGGTGACTCACCTACTTTAGTTTTGGTGGTTGTTTCACTGACTGACACCTAAGCAGTGCTTGATCGGTGGAGTAATGTGGGATTTCACTAAATTTTTCTAGTTACATAAATTCTGATACAATTAGGTACTTTTGCACTTGAGTCCCTCGGGGTCTCTAAAATTGAAGTTTACTCTGAGATTAGGGACTGATTTGTAATTGTTCTAGAACTCAAGAGTTTTTCTGAAAACTAAATAATTATTGAATCTTTGACTGAGATGGTTCAGTTTATGATATGATATCCATAAGCACCATGCATATGCACAATATATGTGATGCATACTGTATAAAATTTCTAGAGAACATGTATGTATGCAGACCTGTAGTGGTAAATTGTAAATAAAGAACTGTGATTTCTACTGTGCACATGTGTA

Coding Potentia
Explanation CPC Score
noncoding -1.15623
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0019500.2 1 16202620 G A
Osa01LNT0019500.2 1 16203373 A G
Osa01LNT0019500.2 1 16203526 C T
Osa01LNT0019500.2 1 16204069 T C
Osa01LNT0019500.2 1 16205165 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0019500.2 osa-miR2873c Cleavage 5.0 22.119 1 21
Osa01LNT0019500.2 osa-miR171h Translation 4.0 14.208 1 21
Osa01LNT0019500.2 osa-miR1849 Translation 4.5 14.33 1 21
Osa01LNT0019500.2 osa-miR2091-5p Translation 4.0 16.422 1 21
Osa01LNT0019500.2 osa-miR2919 Translation 3.5 4.152 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0019500.2 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0019500.2 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0019500.2 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0019500.2 1 qNVB-1-1 Morphological trait Culm/leaf R2159 C178
Osa01LNT0019500.2 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0019500.2 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0019500.2 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0019500.2 1 nan Morphological trait Root RM23 RM306
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus