\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0019600.2

CCTCAGATCCGTGTGCTCGGCTCCTTCCTCCCCTCTTTTCTCCCCGCTTTTCCCATCCAATCCCGGCGGCGGCGGTGGCTCGGTGACGAGAGGAGTAGCAGTGGTAGTGGTGGCTCAATGACGAGGAGGGGCGGCGAGAGCTCGGCGACAGGGAAGGGCGGCGAGAGCTCGGTTCCTCCCTCCCCTCTTCTCCTCTCCAATCCCGGCGGCGGCTCGGCGACAAGTAAGGACGGCGGGAGCTCGGCTCCTTCCGGCAACTGATGGGAGAAGACGCCCCTTGTGGAGAGCTGCTGCCGGTGCTGCCGTCGTCGTCAGCGCCGCCGTCGCAACCAAGGGGACACGGCTTCCTTGCTGGAGAGCTGCTGCCGGTGTTGCCGTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGTAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAGAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTGCGACAGCGACGAGCGGCTTCTCATCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACTGAGTTTCCTCCCTCCCTCCAGTCCCCTGCAATTTAACTCCGGGTCTCTATATTCCCCTCCCATTTGATGATCCTACCAACGATTGGATCCTTTTGGTCATAATGGATGTTGCTGTGCTTCGTGTGCTACCTCTTCAGTTCTGTAGTTACGCAGCCAATGGTGCAGCGAGCTTGGATTTTTATGATGAAATGGCTAGCTTCGGTAGCTGATTTAGAATTTTGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATGGTAGTATTCATGCACATCAACTGGCATTAGACAATCTCACATTTTGCCTGCTTAATTTACACACAATCAAAGCTTAATTCTATGTTAACATCAGGATTTTGTTGTGCCTAAGTAACACCTCTTTTGCTATGGATAGATGAATCGGAAGCAGCAAGGAAGCATATGTCCTTTGTCGTTTGATTGGCCTCAACACTCAGGTCAATGTGTGAACGACTATTTGGCATTTGGCTGGATTTGGTGGTCAGTGACTTGTACTAGTGATGTATTGACCTGGTCAGTGAACCTGTGATGTAATTGAACATGTTTTGGATGGTGATTTGTGGATGTAATTAACTGACTTGTCATGTAACTTACTTGAGGATAACATGTGATCTTTTTTTTTTCTGAATTTGTGATAGCCTGTTTTGTGAATTTGTATTAAATATGAGCTGAATGTTGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.311003
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0019600.2 1 16232212 G A
Osa01LNT0019600.2 1 16232556 G T
Osa01LNT0019600.2 1 16232820 A T
Osa01LNT0019600.2 1 16234397 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0019600.2 osa-miR5791 Cleavage 5.0 8.561 1 21
Osa01LNT0019600.2 osa-miR393a Cleavage 5.0 14.363 1 21
Osa01LNT0019600.2 osa-miR319a-5p Translation 5.0 15.007 1 21
Osa01LNT0019600.2 osa-miR319a-5p Translation 4.5 17.699 1 21
Osa01LNT0019600.2 osa-miR1425-5p Cleavage 4.0 14.84 1 21
Osa01LNT0019600.2 osa-miR1425-3p Translation 4.5 14.791 1 21
Osa01LNT0019600.2 osa-miR1442 Translation 4.0 14.053 1 20
Osa01LNT0019600.2 osa-miR1850.2 Cleavage 4.0 9.216 1 21
Osa01LNT0019600.2 osa-miR1852 Cleavage 4.0 8.974 1 21
Osa01LNT0019600.2 osa-miR1858a Translation 4.5 14.093 1 21
Osa01LNT0019600.2 osa-miR1858b Translation 4.5 14.093 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0019600.2 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0019600.2 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0019600.2 1 nan Morphological trait Root RM23 RM306
Osa01LNT0019600.2 1 qNVB-1-1 Morphological trait Culm/leaf R2159 C178
Osa01LNT0019600.2 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0019600.2 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0019600.2 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0019600.2 1 nan Physiological trait Source activity RG532 RM472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus