© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0221000.1
GTAAAACAAGGCTCAACACTGCACCAAGTAGCGTGCGTTGCTTCGTTCTCACAAGACATCATTGACAATAAAATGCTGGAAATCGTGATATCACATACATATTAAACTCCAAAATAAAGTGCCACATAAGGCACATCAAAGCGTGGTACCACCTTACCCACCATTTGATTGACAAGTAACCCAGACAAATGTTGAAATTTGACGAGCAGGTAGGATTGTCAATTTAACTTAAGTCACAGTTTACTGCATCAGGAAGGTTGTGAAGGTCCAGCCAGCCAGTCCATGACTCTGTGCTCCATCACGCACTTACAAGGCTCTTGAGGATTAATGCAATGTTCACCACAATTCGAACAGTCCGTGAACTCCCCAAGCTCAAATTTTGAGTTCCAGATGAAGATGTTCAGCCGAGAAGCTTTTTGGAGCACAGCACTTGATATTGCCGAAGTCTCATAACCAGATATGTCCAAGTACTCAAGCTCCTCTAGGCAATCAAGGAATTTTATTATTGCAGCACAAGACATATCAGAGTTTGGTATCTCAAGCTTCTTCAGACGTGGAAGGGAGTTGCAAATGATTGAAGCCATCTCTTCGTCGACATAAAGAGCAAACACCTTCAACTCCAGAAAATCTGGACAACACTGATGTACATGGCTGAGAACATCGTGATTAATAAGACCCTCATCCACTGCCATGCCTTTAAGAAATTGTAATTTGTCAATTGCCTTACGGAACTGATCATAAGTTATACATGTGGCAGGAAGGCTGAAATAGTGCAGATTTGGATTCCGATAGACGGCGGGACAACGAAGATCGGCTGCAGTGGTGGTGTGGAGAAGAAGGTGCAGCACGCCCACAAGATGTTCGACGAAATGTGTACAAGGAAGAGGCAGAGAGGGATGGGGTTTTATGGGGGCTTGGCCTTGTGATGGCAGCC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0221000.1 | 3 | 20212649 | T | C |
| Osa03LNT0221000.1 | 3 | 20211543 | A | G |
| Osa03LNT0221000.1 | 3 | 20188414 | A | T |
| Osa03LNT0221000.1 | 3 | 20189486 | A | T |
| Osa03LNT0221000.1 | 3 | 20189876 | A | G |
| Osa03LNT0221000.1 | 3 | 20190918 | A | C |
| Osa03LNT0221000.1 | 3 | 20191317 | G | A |
| Osa03LNT0221000.1 | 3 | 20191365 | A | G |
| Osa03LNT0221000.1 | 3 | 20191834 | T | C |
| Osa03LNT0221000.1 | 3 | 20191848 | A | G |
| Osa03LNT0221000.1 | 3 | 20191944 | A | G |
| Osa03LNT0221000.1 | 3 | 20192146 | T | C |
| Osa03LNT0221000.1 | 3 | 20192152 | T | C |
| Osa03LNT0221000.1 | 3 | 20192522 | A | G |
| Osa03LNT0221000.1 | 3 | 20192607 | T | C |
| Osa03LNT0221000.1 | 3 | 20192735 | G | T |
| Osa03LNT0221000.1 | 3 | 20193405 | T | G |
| Osa03LNT0221000.1 | 3 | 20194608 | A | T |
| Osa03LNT0221000.1 | 3 | 20195058 | A | C |
| Osa03LNT0221000.1 | 3 | 20195189 | T | C |
| Osa03LNT0221000.1 | 3 | 20195712 | A | G |
| Osa03LNT0221000.1 | 3 | 20195767 | T | C |
| Osa03LNT0221000.1 | 3 | 20195777 | A | G |
| Osa03LNT0221000.1 | 3 | 20195822 | T | C |
| Osa03LNT0221000.1 | 3 | 20195859 | C | G |
| Osa03LNT0221000.1 | 3 | 20196764 | T | C |
| Osa03LNT0221000.1 | 3 | 20196964 | A | T |
| Osa03LNT0221000.1 | 3 | 20197146 | A | G |
| Osa03LNT0221000.1 | 3 | 20197442 | T | A |
| Osa03LNT0221000.1 | 3 | 20197884 | T | A |
| Osa03LNT0221000.1 | 3 | 20197944 | A | G |
| Osa03LNT0221000.1 | 3 | 20198422 | A | G |
| Osa03LNT0221000.1 | 3 | 20198784 | T | A |
| Osa03LNT0221000.1 | 3 | 20198983 | T | G |
| Osa03LNT0221000.1 | 3 | 20199240 | A | G |
| Osa03LNT0221000.1 | 3 | 20199373 | T | C |
| Osa03LNT0221000.1 | 3 | 20199382 | G | A |
| Osa03LNT0221000.1 | 3 | 20199704 | A | C |
| Osa03LNT0221000.1 | 3 | 20200030 | G | A |
| Osa03LNT0221000.1 | 3 | 20200179 | T | C |
| Osa03LNT0221000.1 | 3 | 20200232 | A | G |
| Osa03LNT0221000.1 | 3 | 20200413 | T | C |
| Osa03LNT0221000.1 | 3 | 20200476 | T | C |
| Osa03LNT0221000.1 | 3 | 20204243 | T | C |
| Osa03LNT0221000.1 | 3 | 20204272 | T | C |
| Osa03LNT0221000.1 | 3 | 20204279 | A | G |
| Osa03LNT0221000.1 | 3 | 20204461 | T | C |
| Osa03LNT0221000.1 | 3 | 20204466 | A | G |
| Osa03LNT0221000.1 | 3 | 20204526 | A | G |
| Osa03LNT0221000.1 | 3 | 20204748 | T | A |
| Osa03LNT0221000.1 | 3 | 20205020 | A | G |
| Osa03LNT0221000.1 | 3 | 20205273 | T | C |
| Osa03LNT0221000.1 | 3 | 20205570 | A | G |
| Osa03LNT0221000.1 | 3 | 20206140 | A | G |
| Osa03LNT0221000.1 | 3 | 20206831 | T | C |
| Osa03LNT0221000.1 | 3 | 20207046 | A | G |
| Osa03LNT0221000.1 | 3 | 20207869 | G | A |
| Osa03LNT0221000.1 | 3 | 20207883 | A | G |
| Osa03LNT0221000.1 | 3 | 20208120 | C | T |
| Osa03LNT0221000.1 | 3 | 20208353 | A | G |
| Osa03LNT0221000.1 | 3 | 20208537 | T | C |
| Osa03LNT0221000.1 | 3 | 20208551 | G | A |
| Osa03LNT0221000.1 | 3 | 20209178 | A | G |
| Osa03LNT0221000.1 | 3 | 20209257 | G | T |
| Osa03LNT0221000.1 | 3 | 20209448 | T | G |
| Osa03LNT0221000.1 | 3 | 20209583 | A | C |
| Osa03LNT0221000.1 | 3 | 20209603 | A | G |
| Osa03LNT0221000.1 | 3 | 20209792 | A | G |
| Osa03LNT0221000.1 | 3 | 20209922 | A | G |
| Osa03LNT0221000.1 | 3 | 20210187 | A | G |
| Osa03LNT0221000.1 | 3 | 20210246 | T | C |
| Osa03LNT0221000.1 | 3 | 20210992 | T | C |
| Osa03LNT0221000.1 | 3 | 20211674 | A | G |
| Osa03LNT0221000.1 | 3 | 20212051 | T | A |
| Osa03LNT0221000.1 | 3 | 20212071 | A | C |
| Osa03LNT0221000.1 | 3 | 20212181 | A | T |
| Osa03LNT0221000.1 | 3 | 20189970 | C | T |
| Osa03LNT0221000.1 | 3 | 20197399 | T | C |
| Osa03LNT0221000.1 | 3 | 20206483 | T | C |
| Osa03LNT0221000.1 | 3 | 20207188 | T | C |
| Osa03LNT0221000.1 | 3 | 20212613 | T | A |
| Osa03LNT0221000.1 | 3 | 20215496 | A | G |
| Osa03LNT0221000.1 | 3 | 20215717 | T | C |
| Osa03LNT0221000.1 | 3 | 20215737 | T | C |
| Osa03LNT0221000.1 | 3 | 20215764 | T | C |
| Osa03LNT0221000.1 | 3 | 20215827 | T | C |
| Osa03LNT0221000.1 | 3 | 20212694 | T | C |
| Osa03LNT0221000.1 | 3 | 20212757 | G | A |
| Osa03LNT0221000.1 | 3 | 20212948 | A | G |
| Osa03LNT0221000.1 | 3 | 20213210 | T | C |
| Osa03LNT0221000.1 | 3 | 20213548 | C | T |
| Osa03LNT0221000.1 | 3 | 20213609 | A | G |
| Osa03LNT0221000.1 | 3 | 20213852 | C | G |
| Osa03LNT0221000.1 | 3 | 20215093 | C | T |
| Osa03LNT0221000.1 | 3 | 20215381 | G | A |
| Osa03LNT0221000.1 | 3 | 20216057 | A | G |
| Osa03LNT0221000.1 | 3 | 20216065 | G | A |
| Osa03LNT0221000.1 | 3 | 20216110 | A | G |
| Osa03LNT0221000.1 | 3 | 20195372 | T | C |
| Osa03LNT0221000.1 | 3 | 20195476 | A | G |
| Osa03LNT0221000.1 | 3 | 20195588 | A | G |
| Osa03LNT0221000.1 | 3 | 20207357 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa03LNT0221000.1 | DTM_#DNAt_MULE_japo_Os0037 | Chr3 | - | 20212242 | 20218844 | 4037 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0221000.1 | osa-miR5541 | Cleavage | 2.5 | 20.324 | 1 | 21 |
| Osa03LNT0221000.1 | osa-miR408-3p | Cleavage | 4.5 | 11.101 | 1 | 21 |
| Osa03LNT0221000.1 | osa-miR2092-3p | Translation | 4.5 | 9.998 | 1 | 22 |
| Osa03LNT0221000.1 | osa-miR2918 | Cleavage | 5.0 | 18.967 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0221000.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ284 | RZ403 |
| Osa03LNT0221000.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ452 | RZ448 |
| Osa03LNT0221000.1 | 3 | nan | Morphological trait | Panicle/flower | RZ403 | RZ452 |
| Osa03LNT0221000.1 | 3 | An5(t) | Morphological trait | Panicle/flower | C1677 | R19 |
| Osa03LNT0221000.1 | 3 | sho2 | Morphological trait | Dwarf | nan | nan |
| Osa03LNT0221000.1 | 3 | gw3.1 | Morphological trait | Seed | RZ672 | RZ474 |
| Osa03LNT0221000.1 | 3 | qGW-3 | Morphological trait | Seed | G332 | C80 |
| Osa03LNT0221000.1 | 3 | qGL-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0221000.1 | 3 | qLWR-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0221000.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0221000.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0221000.1 | 3 | ccf3b | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0221000.1 | 3 | ccfs3 | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0221000.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0221000.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0221000.1 | 3 | qDLR3 | Resistance or Tolerance | Other soil stress tolerance | RM338 | RM2453 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)