>Osa01LNT0019800.1

CCATGTGCTCAATATAACATCGCAACTTCTATATCTTCAAAACTAGATGACGTGCTAAGAAATTCTTTTATAACTACATAAATATTATTTGCTCATGATGCACCAAATAACTACAAGCGACTCCAACAAAAAGTTTTCCATAACAAGTCACTGACATGTTGTTCATGGACCCACATCTCAATGAGAGAATGAAGGTCAACTTTTGGTCTTTTGGGCCAAATAAGGATTTTATCCCATAATATTTGAATAAGTAAATTATCAAAATTACATTATCATTCATAAGTAAAATGAGTTAGGTAAAAGGAAACGTAAAGACCGCAATATCCATCCATCCATCCATGTGTGACTCCAAGACCAACCGAAAAAGAAAAAACACATTCCCAAACTCAAACCAACAAGGTCAACAGAAAAAAATGCTTGTGTCATTCTTTCTGACAGTAGTTGGATTCGGGTTGGATCAGTTTTTGGGTAAATTACAATAGCCAGGAAGTTTTGCACCACTAATCAAATTGATATATTCCATGTAAATTACAATATGATATATTCCAGGCATG

Explanation	CPC Score
noncoding	-1.05732

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0019800.1	1	16663724	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0019800.1	osa-miR5536	Translation	4.5	7.823	1	22
Osa01LNT0019800.1	osa-miR395f	Translation	4.5	10.844	1	21
Osa01LNT0019800.1	osa-miR1430	Cleavage	5.0	11.44	1	21
Osa01LNT0019800.1	osa-miR5510	Cleavage	5.0	22.302	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0019800.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0019800.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0019800.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0019800.1	1	nan	Morphological trait	Root	RM23	RM306
Osa01LNT0019800.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0019800.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0019800.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0019800.1	1	qNVB-1-1	Morphological trait	Culm/leaf	R2159	C178

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus