© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0221300.1
CCTATATCATGAAAAGCAAAGAAAATGTGCATACCATTTTTTACGAATACGCATGATATCTGCGCATCGTTTCATCAAGCAGGAAAAAAAAAGAAAGAGGCGAGAGGTGCAGGAATTAGCCAACCCCAGCACCCACCCACCAAGGTCTTACAAAACGAAAGAAAAAAAAAACCACACGCACACACAACACTAAACACGAACTTCGACCTCTAAAGGTACAGGCTAGCAAACAGCTCTGGGAGCTTTGAATCTCCTGCCCAGCACCAAACTGCACCCTCGTTAACTATAGCTTGGATTACCACAAACACGCTAGGGGTAGCTCCATGGAAAACACAATCATTTCTATGTTTCCAAATCTCCCAGGCAACTAAGATGACTGGCTAATTGAGCCTCTCCCAGGCAACTAAAATGTGCATACCTTTGAGCAAGTTGTGCTCGCTTAACCTCTGTAGCTGATGTTGGAGAATGGCAGAATCAAGATATGTATGGACTGTTGACTTAGAGAAACCATTAACCAACAGAAGTGGGACTGCAGCTGCACGACGCGCCATTGCAAATGCCATAATCAAGGCTGGATCCTCTGATAACGACAACATGTGTTGACTGAACATTGGCTTCTGGAATTGTAGTAGCACAGAACTAAGGCCCTCTGTGACTGATTTTACATTAACAGGCAACTGCTTTATGTTCCTGACTTTCTCTTGTGTCACAAAGTACAACTGAAACAACAACTTATCATAGTAATGGTGAGCCCTATGAGAAACAGAAGGAGCAATTACATGCCTCATAGAGCCCCATAACACGGAACCAAGGTGTGCGAGGAATGAATCACGAGCCACAGTGTAACTATGATGTTCCTCTGGAACATCTTTAAATAAGTTCCACTTTTCCATCCTATTCAATGCATCAAGAGCTTTCTTCTTATTAATATCATCCGAATCTCCAGTATTGTAACCCTCCAGTTCACTTTTCAGATCATGCCTTCTCTCATCAAGTTCTTTGCAAAGGGCAAGCTGTACCCTTCTTCCAACACAATGCTTGAAGGCAAAAAGTTCGTATACATCAATCTCTGCCAATAGGATATCTACTGCATGGTAATTCTCGCCAAAAGATGAGAATCTCTCTGATTGTATCTTGTAATTTAGCTTCAGCCTCTTCTTCTGTAACTTCTGCAACAGCCCCAATAGTCTTTGCAACATTGGGTAGACTAAGTTCAGTACGAACACCGTCCCCACCAACAGCAGGGCCCCAGGCAAATGGCCCTGCACTCAGATCAATGAAAGCAAATCTGTCTCTGCCAATCCACATATCCGTAAGGCATTCAGCATGCAGACCCTTCAAATCACTGGACTTGAGTGCACTCTCAAATATATCATGCAACTCATCCTTTTTGCCATGTAATACCTGGACAGCTTTGTCATAAACAATACTCCCTCCATTCCTAATTGATCTTCATATATGGTTTGTGCATCAATACCAAGACAATCCTGCGGAGCACTTAATCAGCATCGAAAACATGCATTAGCGTTTCGTATCCGTGAATGCAGCGCCATCAATTTTGCATGCCGTATGGCTGGCCAATCAGTTGTGAGCATATTAAATCCATGCATGCAGCAGCTCCTAATCAGTTTTGCATGCCGCATAGACTGACCAATCAGATGCATGCAGTGTTCATTAGGAAGTGTCATTAACGTCCTTCCCGGGATTTTCATCGCCTCCCCACCGTAATGCGACGATCAAAATGGAATTTTCATTTTTTTGCAATACGATGATCAAAAGGGAACAGAGGGAGTATCATCTTTGCTCTTTCCTTCCTTCAACAGCTCAAAATTGCTTAAGGCTTCCTTTCACTTCTTTGACCAATCCCCCTGTTAAAGAATTTGAATAAAAGCATTCCGCTAGGTTTATACATTAAAACTTTTTGATGAATGTTCGCCTTCATAACTTTGTATCATGCATTCTAATCAATTCCAAATTCCAATGGGCATACAGTATCCTTTTTAATTCATTAATTCCAAGTGTCAACAAAAGTCAGTACTTGAAGTCAAGAAGGATGTGTGCAGTACTGCAGTTCCTAATTCCAAGCAGTTGAATATCAAAATTGGTGCTATTCCATACTATACTAGCAACAAAATATTCATTTTTAGACCTTCAAACCAAAGAACTGAACTCTAAAATTTCAAGTGCAACTTCTAATACATGGCAAGTTGTATAAACCAGTTGCAGTATATAACACTTTCTTGAATTCATTAGATGAAAAGTCTAAGCACTCTGAATACATGCATGTACGGAAAAACAATGTAACCGTCTAATGAACTACTCCCTCCGTTTTATATTATAAGTCATTTGACTTTTTTTCTAGTCAAACTTTGTTAAGTTTGACCAAGTTTATAGAAAAATCTAGCAACATTGAAATATCAAATTAGTTTCATTAAATGTAACATTAAATACATTTTTATAATATGTTTGTCTTGTGTTGAAAATACTAATATATTTTTACATAAATTTGGTCAAACTTAAAGAAGTTTGATTAGGAAAAAAGTCAAACGACTAATAATATGAAGCGGAGGGAGTAATTAGCTACTCCCTCTGCCTCACAATAAATCAACTTCTGGCTACAAACCTGGACATAACCTATATCCAGGTTCGTAGCTAGAAGTTGATTTATTTTGAGACGGAGGGAGTTAGTAGCAAGCAAGTCAATATTTGATTAGCTTTGTGGTTGACTATGTTATGCAACCTCAAGCTTCATCAACAAAGTTAGTTACGGCCAAGGTTGAACACAGATGAAATGTTTGGAATGGCCAACACAATGACCAAAAAATAACACGTTGATGCAGGCCAAAATGATTTTGTAAAGAATACAGAAATGTAACATTAAAAATACCATATCCATATTGTCAGTTGTTGTCCACGAAAATGATGATAAAGGATGACTCTCATACAAGGGTCTTCTGTTGACTCCCTTTTCAATATCAAGATAGTCTCTTGTCACTTTTAGATTGAAGAATCCGAGCTTGCAGGGTCTTATTATTGTCAGGCAACTAACAGAAAGGTCCAACACATTGGCTTGCATAGTCATATGTTTGACATTTGACAGCAGTAATGCTCCAGAAATAAGATGGAATTCCATGATATCTCAGTGAAAAATCTTGCAAATGTCCTCGTACTCAATGGCCTTAAGAACCTTCCCATCATAGAGGCCCTTCTCAACCTGCACTTTGGCACAAAATCTCTCTGTGTCCACTGAAAGCAACCTTGCATTAGATCCCCGGTAAGCTCCATTAACAATACGCACCAGCCCACCAATCTGGGGGATAACTGTCTCAAGCTCATCTTGGTCGACCCTAAGAACATGCTTGCTCTCCAGCATCTCAATCTCCCCAACATACTTATCAATCACCCTCTTCACCACACCCTTCTGTTTGCAGTACCCCTTCTCTGCCAGCGACTTGCTCATCACCTTGACCACAATACCTGGGCATAGCCAGTAATCCTTCCTATTGCTCCGCTCCTTCGCTTTCTCCTCCTCCTTCATCAGCTCATCCAATGCTGACCTCCTAGCTTCTGCTGCGTTTATAGCATCCTTTCCCTTCTTCTTGGCCAACTCTTCCTTCTCCTTATCCCGCGCGCTCACCTCATCCTCTTCCTCAAAACCAAATTTAACCTTTGGCTTATCATCGAGAGGGTTAACCTTTGGCCCTGGCACAGCCCGCTGAAGTGCAATTGCAATCTTCCCTGCTGCTTTGTTGGCTTCTTTTGCATCCTCCTCTTGTCCCTCATGGTCATTTTCTGAGTCCGAATACTCATCTTCGCTGCCGGACTCACCTTCGCTACCATCCGGACTAGCATCATCACCAAGTTCACCATTAGTTTTACCCATGGATTGCTGGGCTCGCTCTATCTGGCGTGCAATCATGCGCTCCTGCCGCTCGTCCTCCGCAAGGTCGGACTTGATCCTCTTGCGCTTGAGCCTGGCCTTCACGGCCTGCTCGGAGTCGCGGTCGATGTAGGTGATGAACCACCCTTTGGGAGTGTCCTCAACCTTGCAGTGGCCCTCGCGCCCGAGGAACTTGACGAACTCGGTGAGCGTGGCCCAGCGCGTGGAGTTCATGTGGACGTGGTGGCGGTCGGCGATGAACTCGTTGTAGACGACGGTGGCGGCGATGCGGGAGTGGCGGTGGGCGCGGCGGAGCAAGGTGAGGAAGGCGTCGAGGAACTCCTCGGAGAAGCCCTCGACGACTCGGTCGGGGGCCTGGCCGAACACCTGCATCTGGCGCTGGTGCGACTCCGACATGCAGTGGCACTTGAAGCCATTCTCGTCGCGGCACTGCTTCTGGCACATCTGGCAGTACCACCGCAGCTTCTGCAGCCCCTTCGCCTTGATCCTGTTCGCGATCGCCTTCGGCGTCAGGAACTCGTGCTTCCCCATCTCTTCGCCGACGCGGCAGAGGGTAGGTGTTGTTCTTTAGGGGAGGCTGCGTCGATGGCCCGAGCGGGAGGGAAGGCGGCGAAATCGGAGGAGAGAATTATCGGGAGAAAGCTGGGGTAGATTGGGGGATTGGGGATTGGGGATTGGGGAAGTTTGTGTTTCAGAGCGCTGCGGTTGGGGAAGGCGGCCACGCGGATGGCGGGGGAGGCGGCGGCCCTTC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0221300.1 | 3 | 20678537 | T | C |
| Osa03LNT0221300.1 | 3 | 20678917 | C | A |
| Osa03LNT0221300.1 | 3 | 20679004 | T | C |
| Osa03LNT0221300.1 | 3 | 20679796 | T | C |
| Osa03LNT0221300.1 | 3 | 20680125 | T | C |
| Osa03LNT0221300.1 | 3 | 20680128 | T | C |
| Osa03LNT0221300.1 | 3 | 20680219 | C | G |
| Osa03LNT0221300.1 | 3 | 20684311 | A | G |
| Osa03LNT0221300.1 | 3 | 20684354 | T | G |
| Osa03LNT0221300.1 | 3 | 20686037 | C | A |
| Osa03LNT0221300.1 | 3 | 20686352 | G | A |
| Osa03LNT0221300.1 | 3 | 20686930 | C | A |
| Osa03LNT0221300.1 | 3 | 20687447 | A | G |
| Osa03LNT0221300.1 | 3 | 20687503 | C | T |
| Osa03LNT0221300.1 | 3 | 20690079 | G | A |
| Osa03LNT0221300.1 | 3 | 20690869 | G | A |
| Osa03LNT0221300.1 | 3 | 20691184 | A | G |
| Osa03LNT0221300.1 | 3 | 20691431 | T | C |
| Osa03LNT0221300.1 | 3 | 20680682 | G | A |
| Osa03LNT0221300.1 | 3 | 20681048 | T | C |
| Osa03LNT0221300.1 | 3 | 20682284 | A | G |
| Osa03LNT0221300.1 | 3 | 20682469 | C | T |
| Osa03LNT0221300.1 | 3 | 20682590 | A | C |
| Osa03LNT0221300.1 | 3 | 20682831 | A | G |
| Osa03LNT0221300.1 | 3 | 20683289 | C | T |
| Osa03LNT0221300.1 | 3 | 20683753 | G | A |
| Osa03LNT0221300.1 | 3 | 20683808 | G | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0221300.1 | osa-miR5820 | Cleavage | 5.0 | 14.397 | 1 | 21 |
| Osa03LNT0221300.1 | osa-miR5831 | Cleavage | 4.0 | 18.929 | 1 | 24 |
| Osa03LNT0221300.1 | osa-miR437 | Translation | 3.5 | 19.119 | 1 | 21 |
| Osa03LNT0221300.1 | osa-miR816 | Translation | 4.0 | 22.004 | 1 | 20 |
| Osa03LNT0221300.1 | osa-miR1436 | Cleavage | 4.5 | 11.299 | 1 | 21 |
| Osa03LNT0221300.1 | osa-miR1439 | Translation | 4.5 | 9.033 | 1 | 21 |
| Osa03LNT0221300.1 | osa-miR1439 | Cleavage | 4.5 | 11.597 | 1 | 21 |
| Osa03LNT0221300.1 | osa-miR2092-3p | Cleavage | 4.5 | 14.656 | 1 | 22 |
| Osa03LNT0221300.1 | osa-miR2864.2 | Cleavage | 3.0 | 8.652 | 1 | 19 |
| Osa03LNT0221300.1 | osa-miR2872 | Translation | 4.5 | 9.243 | 1 | 21 |
| Osa03LNT0221300.1 | osa-miR2879 | Cleavage | 5.0 | 21.41 | 1 | 24 |
| Osa03LNT0221300.1 | osa-miR812o-5p | Translation | 5.0 | 15.327 | 1 | 21 |
| Osa03LNT0221300.1 | osa-miR5077 | Translation | 4.5 | 16.801 | 1 | 19 |
| Osa03LNT0221300.1 | osa-miR5501 | Translation | 5.0 | 6.139 | 1 | 21 |
| Osa03LNT0221300.1 | osa-miR5502 | Cleavage | 4.0 | 14.51 | 1 | 22 |
| Osa03LNT0221300.1 | osa-miR5505 | Translation | 3.5 | 12.788 | 1 | 22 |
| Osa03LNT0221300.1 | osa-miR5505 | Cleavage | 4.5 | 15.56 | 1 | 22 |
| Osa03LNT0221300.1 | osa-miR2275d | Cleavage | 4.5 | 17.259 | 1 | 22 |
| Osa03LNT0221300.1 | osa-miR1435 | Translation | 3.0 | 17.493 | 1 | 20 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0221300.1 | 3 | nan | Morphological trait | Panicle/flower | RZ403 | RZ452 |
| Osa03LNT0221300.1 | 3 | An5(t) | Morphological trait | Panicle/flower | C1677 | R19 |
| Osa03LNT0221300.1 | 3 | sho2 | Morphological trait | Dwarf | nan | nan |
| Osa03LNT0221300.1 | 3 | gw3.1 | Morphological trait | Seed | RZ672 | RZ474 |
| Osa03LNT0221300.1 | 3 | qGW-3 | Morphological trait | Seed | G332 | C80 |
| Osa03LNT0221300.1 | 3 | qGL-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0221300.1 | 3 | qLWR-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0221300.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0221300.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0221300.1 | 3 | ccf3b | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0221300.1 | 3 | ccfs3 | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0221300.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0221300.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0221300.1 | 3 | qDLR3 | Resistance or Tolerance | Other soil stress tolerance | RM338 | RM2453 |
| Osa03LNT0221300.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ284 | RZ403 |
| Osa03LNT0221300.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ452 | RZ448 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)