>Osa01LNT0020000.2

GCCACACCAAAATACACTAAAAAAACCACCAACTCCCAAAATTATTAGAAATTTCGGCAGAGTAACCTAAAAGTACGGACATCCATGACAGGCAGTTACAAGATAACTCAATAACGATATAAACCACACAATCCAACCCATCCTATCTCCACAAATTCCACGTGAAAATAAGGACCAGAACTTTAAATGACCTTCACAAGTTCTACGCAAAACTTATGCTAAGTAGAAACATAGTCTAAAAGTAAATTTCAATAGTGTGCAATAATAATGTGTAGTTCAAGGGTGCTACTCCCGTCCCATGCCAATCAATATCATTAGGTACCCAGAAAATCCCCAACTTTTGCCTCTCTTTCCTTTTTCCTTCTTTTCTCCTGCTTTCCCTGCTTCTTGAAACTCCTGCTCTCAAGGAGTCGAGCAGGAGTGGCGCTGGACGGCGATGGCTGAACCTGCGGCGACGGCGCAGCAGCCATTGGGGTGATGGCGACTAGGGTTTGTAGCGGCTGCAGGGTTATCGATCTCTTCCCC

Explanation	CPC Score
noncoding	-1.11681

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0020000.2	1	17076190	T	C
Osa01LNT0020000.2	1	17076209	T	C
Osa01LNT0020000.2	1	17076224	T	C
Osa01LNT0020000.2	1	17076227	A	G
Osa01LNT0020000.2	1	17076556	G	A
Osa01LNT0020000.2	1	17076649	T	C
Osa01LNT0020000.2	1	17076805	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0020000.2	osa-miR2919	Cleavage	3.5	7.08	1	19

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0020000.2	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0020000.2	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0020000.2	1	nan	Morphological trait	Root	RM23	RM306
Osa01LNT0020000.2	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0020000.2	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0020000.2	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0020000.2	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0020000.2	1	qNVB-1-1	Morphological trait	Culm/leaf	R2159	C178

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus