© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0222200.1
GAAGCATGAAAACCTACCAGAATTCATGAGGCCGTTCACACGCATCGTTTGCGAGCACACAAAAAGGAGCATTTCCAAATTACATGTATGAATCCAACCAAAACTTTTCTATTGTGCGCAACTATCTATATCAATTGTTAGCTACTGTTGCACGCTTAAATAGTTAAGTATCACTATACTGCAGCAGCCTCTGTATCTTTGTGACCAGCAATCAGATCTTTAAGCACAGCCTTTGATGCCAACTTTTTCGCCACCAACTTGCAGGGACCTGATTTTGTTGCGGAGTATGTAGTCTCTCCAGCCTTCACCCGAGCAATGACCGATGAGACTCCATCAACATGGTTTTTTTCGTAGGTTATTTTGAATGATCTACGATCACAAAATTCTTGCAGCCCTTTCACCGGGTCAGGCTCGATGGTTTCGGGGGTGGCAAGAGGTTCCAATAGCCGCTTCATGCTTCTCCAAACAACCTCCTTGTCACACTTGCTGTCGAGATAAATGGCACCAGCTATTGATTCAATCACATCCCCGAGAACCTTTGGTAGACCAATGCCCGCTTCCCAGCCATAAGATGGACCTGTAAATGACTGCCCAAATTCCTCAAGGTAGTAGCTCATCTTCCTATGCAGTTCTGATGATGAGTGAAGGATATGCTTGTTTAATCCTGATTTAACAGCTGCATGCGCGTAACAATTGTTGTTCACAGAGGCAGATCTAAGATCTGTCAACAATTCTGGAGTACAGTCAGGGTATTTGCTGTAGTAATATTCAGTGAAAAGATGATCCAAAATAGCATCTCCAAGAAACTCGAGCCTCTGATAGCATGAAGTAGGGCCAGAAGTCTGATATGAGCCATGTGTCAATGCTTCGAGCAATAATAAAGAATCATTGAACTTGTAACCAAGCATTCCCTCTAAGCTCCTCACATTAATGAACTCTTCAGCTTTCATTGAAATTTTCCTTTCAACTGGAATTTCAGTGTGAAATTCTATATTCATCCCTAATGATTTCATCAAAAGAAATGCTGCCTTTTCCCCAGCAGTACTGAGGTAAGCCCCAATTAAGGCCTCAACTGAATCCGCAATCCTCTTACTTTTAATAGACATTTTCCTTTGGCTGTACATACCATTGGGTGCCAGAAAGGAAATTTTTTTGTTATCACGCTCATCATAGTCCAAGCAAGGGATGATCCAATCTCTTGGATTAAACTCCTCAGCATGAATGTAACCCACAAGATTACTGCTGCAGGCCAGCTGGCACAGAGCTGCATTGGAGATCAAGTTTTTCTTCATTTTTGTTAATATGCCTTCATGTTGAAGCCTGTATTCACTAAAAAGGTGCCGAGTTGTAACATATTTGAGGAAAGAATCCCCAAGTGTTTCTAATGATTCCTGTGAAAATTCTTCTTGGCATTTCTTTGTTGTTAATGCTTCCAGGATCTTCAAAACCGGTACGTCAAACTGCTGCACTGTTGGGCCTAATTGGACCTTTAATTTCACAGAAAGAAGCATGCACTGGATGCGGAACATTATGGAAGGAACATATGAGAAGATGTGCAAATTATTGGCGGACACTGGTGACATGATAATTCTGCAGAGTTCAGGTGGCAACTCAACACTATATCTATCACCAGGTTCTTTTTCTTTTTTAGAGTAGCAGTTGTGGAGGAAGTTCCGCACTTTCACATGTTTACTGCCAGCCAAGAGCGGCTGATTTTCAAAAGTCAAAGTAAGACCATGCCTAGTCTTAAAATAATCTTTGTAGGTAACAACAGTCCCATCATGTTGAGGCAAACAGGAATTTGCATCTAAGTCAAGAAACCCACTAATAACATAAAAGATGTTATTATGAGGGGTACACACAATGGAATTTTTAAGGATGCACCTGCAGAAAGGACCATCTTTTGTCTGCAGTAAATCAATATCTTTACAAGAATGGCAATGTGTCATATGTTTGTTGTTAGCTTCATATATTGGTGAGGATGAGAACTTCATACTGCACCAATCAATTCTGCCAGAAACTAAAGGCAGAAGTAGATAGACTACTCCAATAGGCACTTGCATCTCATGGAAGTATTTAATACCATTGCTAACCTCCAAATGGTCATCACCAATAAGAAACGAAAGAATAGTTGTCTGAAATCTTCTAGCAATAATTACCTGTTCTTGATTGAGATGGATGATGCCAACATATTTCATGGTAACACTAGCATTGTCTTGCCCACCTGGCAATTTAAATGAGCTAGAAGTAAAGTCAGATCCCAAATCACACTTCAAAGCTAACAGTATGTCAGTTGGAGAAGCTGTTTTGGGACATCCTTCCAATGAGATCTTATAGCAATAATATATGCCAAGACGAGAAAAGGAGCGCCAATTATCCACAAATTCTTCTGGAAAGTAAGAAGGCTGCTCAATTTTGTTCTCAACAACGATGTCAGGTTCTTCATCACATGGAACATCTAATTCTGGTAAAAGAGAATCTGTGAGTGCACCAATGGCATGTAGTTCTTGGCAGGCCTTAAGACAAACTGTCTCCTTGAGAATAGAACCTTCTCCTTCTACATTAACTGTCTGCACAGGACTGCTCTTAGGAAGATGCAGAGTGCATGTGCCAGATGCCTTGTCTATATCGAATCTTGGTAGAGGATTAAAATATTCATCCGATGGAAGCTTTGAGCAGAAAAAATGAATTAATGGAACGCTGGAGTTTAGTGTCACAATTGCTCTAGTTGACTCGACACGGTAATAGGTATCCTCGCACAAGGTGTTCTCAAGTGGTTGACAAGAAATTGATCCCAATCTCAGAGATTCCTCCCGCATTATTTGCCCACTTGCGAGAAACTTCTCTGCATTAGTTTGAGCTTCCACATCCCCCCTTCCGACAAGTAAAAGATAGTCAGAGTTTTCCATCCTAGCTCGACCACGGGACTGTATAAAGCTGCATACTGTTGCTGATGGATCAAAGCGAATTACCAAGTTACAACTTGGCACATCTAAACCCTCCTCCAAAATTTGTGTGGCAATAATTATATGTACCTTTCCTTTTCGAAAAGATTCAACAATTTCTGTATGATTTTTCCTGCTCTGAGATAGCAAACCAGGACGGCTTCCTGCCATGTGCTTAACATTCCACCCAGACATTTGATGAATAGATGAAAGTAGGTGCTCTAATACTATGCTTGTGATAACTCTCTCAACAAACACAATGCATCTTAAGTCTTGCATATGCCTGTACTGCAGAAGAGTTCGAATAAGGCAATGAACTTTGGGTGTCAATATCCCATCTTGAGAATCAGCTGGAAATTTTTCACCAATATGACCATTCTTCAAGAAACATGAAAGTTCTCTATGTACTTCTTCGCTGTAGTTTCTAATGAAGCCCTCAACATTTTTATCCAATGTTTCACCCCAGAAGGATAGGCTGTTTTCCTCGTATGATTGTACCTCAGCAGCCTTTGCTGCCAGCCATACTCCTAGATTATATAAACAATATACAAATGTATGATGCAATTTTGATATCCTTTGCTTAGCGTTTTCCAGAGATGAACCATGTAGTTTTCTGTCCAGAGCTTCTATATGCTAAGAGAATGAAACAAAATTGCATTGGTATCTTTTTATTCAATCTATTCAAACAACTGAGAATATTGGCATGCAGCTCAGATGAAATGTTGGAATCGTCAAAGTCCACTATTTTTGTAGAAGCAAATGGTATGTACTCCGACAAAGCTGATTCACTATCAACAGTGTACACCTTGGAATTCATGAGATTCTCAATCTCAGAAATTTGCTTTGAATAATTGTGCGGATTCAAATCTTTTGAATAAATGAGCGAAGCAGACATCCCAAATATCCTTGGCAGAGGGTCTGACGCACTAGAATTCAACTGGGGGTGATAAAATTCCTTGAAAATGCAGGCGTACGGCGTATTGCCCCTGGCGTGGTGACACTCGTCGAAGATGAGCAGCGCGATGTCCTGGAGGCGGAAGAAGCTGTGGCGGAGGTTGTCGAGCAGGATCTGCGGCGTCATGACGAGCACCTCGCCGTCCTCCAGTTGGGATCGCCAGGTGGCGGCGTCCCAGAAGTCGACCCCCATCTCGCCGCAGAACTGCTTGACGACGAGGTCGGTGTGCTGCTCGACGACGCGCGCCTGCTGGCCCACGAGGACGACGGTGGGGACGAGGAAGACGGCGAAGCGGCGCGAGTCCGGCCTCCGCACGCGGTGCGCGTACGCCCGGAGCAGCATCACCGCGATGAGCGTCTTCCCGCTCCCGGTCTCCAGGAACGCCAGGGTGTTCCCCCGCACCGCCCGCTCCAGCGCCTCCAGCTGGTACCATCTGGCCATTGTCTTCGGGTCGGGCGGCGGCGGAGGCCGGAGCGGTTCCACCGCCTTGGCGCCCCCATCTCCTCGACCTCCGGCGGCGGTGAGGGGGCCACCCATGGCGACGGCGGCGGCGGCGGAGGAGGAGGAGGGGTTTGGGGGAGGAATCGGGGGAGGCGGCGGGATGGGGGTGGGAGAGTGAGGTGGCGCCGACGCTTGGGCCGCCTCCGCCTCCGCCTCCTTCGGTGCACGCACGAATCCGAACCGAATTCCTACGAGTCGCGCGCGCG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0222200.1 | 3 | 21502875 | G | A |
| Osa03LNT0222200.1 | 3 | 21503000 | T | C |
| Osa03LNT0222200.1 | 3 | 21503561 | T | C |
| Osa03LNT0222200.1 | 3 | 21501271 | A | G |
| Osa03LNT0222200.1 | 3 | 21502477 | G | C |
| Osa03LNT0222200.1 | 3 | 21505079 | G | T |
| Osa03LNT0222200.1 | 3 | 21506854 | A | C |
| Osa03LNT0222200.1 | 3 | 21506992 | A | C |
| Osa03LNT0222200.1 | 3 | 21507355 | G | A |
| Osa03LNT0222200.1 | 3 | 21509015 | A | G |
| Osa03LNT0222200.1 | 3 | 21509117 | A | G |
| Osa03LNT0222200.1 | 3 | 21509319 | A | C |
| Osa03LNT0222200.1 | 3 | 21511072 | T | C |
| Osa03LNT0222200.1 | 3 | 21511241 | A | G |
| Osa03LNT0222200.1 | 3 | 21512180 | A | G |
| Osa03LNT0222200.1 | 3 | 21512186 | A | T |
| Osa03LNT0222200.1 | 3 | 21512938 | A | T |
| Osa03LNT0222200.1 | 3 | 21513287 | T | A |
| Osa03LNT0222200.1 | 3 | 21514261 | A | G |
| Osa03LNT0222200.1 | 3 | 21509244 | C | T |
| Osa03LNT0222200.1 | 3 | 21513334 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0222200.1 | osa-miR5528 | Translation | 5.0 | 15.655 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR5079b | Cleavage | 3.5 | 14.175 | 1 | 22 |
| Osa03LNT0222200.1 | osa-miR162a | Translation | 5.0 | 12.965 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR169a | Cleavage | 4.5 | 19.93 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR395u | Translation | 4.5 | 17.394 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR397b | Translation | 4.5 | 15.411 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR397b | Translation | 5.0 | 20.803 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR162b | Translation | 5.0 | 12.965 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR169b | Cleavage | 4.5 | 19.93 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR169c | Cleavage | 4.5 | 19.93 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR169n | Cleavage | 5.0 | 19.93 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR169o | Cleavage | 5.0 | 19.93 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR530-3p | Cleavage | 3.0 | 15.632 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR1873 | Translation | 4.0 | 16.968 | 1 | 24 |
| Osa03LNT0222200.1 | osa-miR2100-5p | Cleavage | 4.5 | 17.094 | 1 | 22 |
| Osa03LNT0222200.1 | osa-miR2876-3p | Translation | 5.0 | 16.925 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR5079a | Cleavage | 3.5 | 14.175 | 1 | 22 |
| Osa03LNT0222200.1 | osa-miR5152-5p | Cleavage | 4.5 | 9.707 | 1 | 21 |
| Osa03LNT0222200.1 | osa-miR5519 | Cleavage | 5.0 | 14.506 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0222200.1 | 3 | qGL-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0222200.1 | 3 | qLWR-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0222200.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0222200.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0222200.1 | 3 | ccf3b | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0222200.1 | 3 | ccfs3 | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0222200.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0222200.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0222200.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ284 | RZ403 |
| Osa03LNT0222200.1 | 3 | An5(t) | Morphological trait | Panicle/flower | C1677 | R19 |
| Osa03LNT0222200.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ452 | RZ448 |
| Osa03LNT0222200.1 | 3 | nan | Morphological trait | Panicle/flower | RZ403 | RZ452 |
| Osa03LNT0222200.1 | 3 | sho2 | Morphological trait | Dwarf | nan | nan |
| Osa03LNT0222200.1 | 3 | gw3.1 | Morphological trait | Seed | RZ672 | RZ474 |
| Osa03LNT0222200.1 | 3 | qGW-3 | Morphological trait | Seed | G332 | C80 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)