© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0223000.1
GTAAGAAAGATCCAATCTTATTGGGCTTCTTCACAGTGTCCAGCTAAGAAAGTAGTTCTAATTACAGTATACATGACCCCAACGTAAAATAGTTTCTCCAAATGCTACTTTGGATAGTGTACTTACTTTTCTTACAAAATGGGAGCCTAAGGCTAATCTAACCTGCACGATGGACCTTTACTTTTGGACGACGATGGTGCCAGAGAATATAACTGTTGTTTGTTTTGCCCTTCTACAATAAAACATCTGAGCATAGGAACATTTGGAATTGTCACCAACTTTGGACAGTTGATCAATTTCATTTCTTCAAGCACTGGAATTGTGAATACTTCTATCACCTCATCTTCTTGCCACTTTTCCAAGCTTGGCATATCACACAGGATAAGACTCTTCAACCTCCAGAAGAATCGATAATAGCTGACCTCAATGTTGTCCATCGATACATTGTCGCAAAAAAGTGTGAGACTGTCCATTCCTTCAAGATGTAGGACCTCAAGTGATGGAAAATACTGCACAGGAGGAAGCCTCTTACATCTTGCGCAATCTTTGATGGTTAGTTTAACCAGATTAGCAAGAGTTTGACCTGGCCACCAAATTGGAAGTATGCTACCAGGGTATCGCCAAACCTTGAGTGTCTGTACACACATAGGGGTTCTAAGAGCCTCCATCACTTCCTCGGCATTGTATGCATTTACCTCGTCATTCCTAAACATACCCCAACACAACAACATATTGGACATTCTTGTTTTTAGAGATAAATTTGCGGCCTCGGCTTTTGATTTGTCCCTCACGTTCTTCAGATTATATATTTCAAGCCGCCCACCGAGATCCATGCTCTTGATCTCTTCAATTCCATACCCATCACCATTGCCCACTATGTAAGTTGTCAGTGTTTGAAGGTTCTGCAATTGTCCCATATTTGACGGCATGTTTTCTAATCGGAAGCAGCCATCGATATAAATGTGCCTTAAATTCTCCATAAACCTCATGTTTTCTGGAAGTTGCTTTAGGTAAAAACAATCGGAGAGCCTCAGAGTTTGCAGGTTATAGATCATGAAAAAGTCCTCTGGAAGCGACGTTATCCAACTTCTTGACAGATCAAGGTACCTGAGATGCTTCATATCTTGGCAACTAAATGGAACACTGGCGGACAAGAGACCATGCAGGTCTAACGCTCTCAAGGAGTTGGATTTCCAAAAATCAGGATTAGACACACTTATTCGACATCCTTCTCCTTGTGACAACAGTGTGTGGATACCCCATGCATTGGGTAGAATCATATCAACATCTAACCCTGAACCAACCACTGACAAGTGATGGAGCTCTGGCATCACTTCTGTAAGTTGGTGGCCTTGATGTAGGATTCGGATCTCTTTTCCAGCAGCTGACGTTGCTATGCCATGAACAAGAGGGTGCATCTTATAGATTGTTACTCCATTGTAAGGTTGACTGACATCTTGAAGAAATGATCTTGACTGTAGCCTATCTAACATCCAAGCCCCCATACCTTCAGTATCGTACCATACCATATCATTAGCCATCCACAGCTGGATCAGCATATCACCATCCACTTCAAAAGCTTCAGGAAATAAAGCACAGAATGCAAAGCACCTCTTGGTGTCTGGTTGCAAGTGCTCATAGCTCATCTGAAGTGCGACCGAGGCTACACCTGCCGTCGTGGTCAGCATATCGCTTTCTGCAAGAGCCAACCATTCATTGGCAGCTTCTATGACACTAGACCATTCATTAGAGGTTCCCTTCTTTCTCAGCAAATCCCCGAGTGTTACAGCAGCTAGAGGAATTCCATGACACTTTTGCACGAGGGATTGACCAACCTGGATGAGCTCGGGTTTGTCATCTAGGCCACATAACATTCGCTGCCTCATTATGGACCATATCTCATCATCACTCATTGGTCCCAGCTCAATGATGCCAGATGCAGGTGCTTCTAAGGTTCTTGCAACACAAAGTTCACGGGTCGTCACAATGACCGTGCTCCCTGATGCTCCAGATGCCAGTGAGGTTCTGAGTTCTTCCCAGCCATTGGTGTTCTCATCACAAACATCATCTAAGACGAGCAAAAACCTTCTTTCATGTAAAATGTTCTGGAGGTAGGATTGCAACTCCTTCTCTTCCTTGTGATCCATTTGTGTCTCCAATGGCTCACAGGTTGCAACCTCAATAATCCGTTTTGTGATTCTCATTGCATCAAATTGGCGAGATACATTCACCCATATGCACAATGAGAAATATTCCTTCACATTGACTTCATCAAAGATTAATTGAACCAAGGCAGTTTTTCCCACTCCTTCAATGCCAACTACACATAGGACCTTGAGGCCTTCATGCTTGTATCTGTCCAGACAGAATAGTTTTTGCTTTATCTCTTGCTTCTCATGCACCCTTCCCACAATATTATTTTGCATTACCAATGGCACGTGGTTGATGAAGCCATTGATCTCTGCACCTAGTGCATTAAGTTGGCCGGTGATCATTTTAAGCTTCCTCTTCATGCTTCGAGGAAGAACTAATGGAATATACATGTTGCGCATCATCCTGTTCCTGTGCCCGTCAACCAAAGCCTTGTTGTGCTGAGCCTCCCATCTCAACTCCTCCAGTAGATGCTCAACTTTGAAGGTGAGTAACCTCAACTCAGCCATTGAAAATCTTAGTGTCATATCTTTGTTGTTCTGTCCTGCTTATTGGCTTTTCAACAGTACCAGAGGCAACCTGGTTCATGAAGTTTACATCTGTAAACTCAAACCCTCGACACCCCCCACCCTAAAAAAAATCCACCAACACCAAATATATGCCAGTTCTTCCAGCGGATTCAGCCGCTTGTCGGAGCATCTGCAGACTTTCGCACAGGGTGGAGTACTCGCGGGCGATCGTGAGGACACCCATGAAACCTCTAAGAAATTTGTCAGATGCCTTCTGTACCAGGCTGTTGAGGATGGCCGTCAGCTGTCCGCCCCCGTCGTTGTCGTCGTCGTCGCCGCCGCTGGCGGCCTTCGTCCGCTGCTTTTCCGGGCGAAAGCCGCCTCTAAAGCAACTCGCCATGGATATTTCCCGTACGTGCTCGACCTCGTTCTCGTGCTTACTAGGATGAATGGCAGGATGTGGGAAGAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0223000.1 | 3 | 22349117 | A | G |
| Osa03LNT0223000.1 | 3 | 22348077 | A | T |
| Osa03LNT0223000.1 | 3 | 22348079 | G | C |
| Osa03LNT0223000.1 | 3 | 22348485 | T | G |
| Osa03LNT0223000.1 | 3 | 22348924 | A | G |
| Osa03LNT0223000.1 | 3 | 22349347 | T | C |
| Osa03LNT0223000.1 | 3 | 22349502 | A | G |
| Osa03LNT0223000.1 | 3 | 22349533 | T | G |
| Osa03LNT0223000.1 | 3 | 22350111 | T | C |
| Osa03LNT0223000.1 | 3 | 22350818 | T | C |
| Osa03LNT0223000.1 | 3 | 22350942 | A | T |
| Osa03LNT0223000.1 | 3 | 22350984 | A | C |
| Osa03LNT0223000.1 | 3 | 22351483 | A | G |
| Osa03LNT0223000.1 | 3 | 22351767 | A | G |
| Osa03LNT0223000.1 | 3 | 22352217 | G | A |
| Osa03LNT0223000.1 | 3 | 22352259 | T | C |
| Osa03LNT0223000.1 | 3 | 22353109 | G | T |
| Osa03LNT0223000.1 | 3 | 22353205 | A | T |
| Osa03LNT0223000.1 | 3 | 22353281 | A | T |
| Osa03LNT0223000.1 | 3 | 22353312 | T | C |
| Osa03LNT0223000.1 | 3 | 22353326 | G | A |
| Osa03LNT0223000.1 | 3 | 22353487 | A | G |
| Osa03LNT0223000.1 | 3 | 22353493 | A | G |
| Osa03LNT0223000.1 | 3 | 22353587 | A | C |
| Osa03LNT0223000.1 | 3 | 22353663 | T | C |
| Osa03LNT0223000.1 | 3 | 22353750 | T | C |
| Osa03LNT0223000.1 | 3 | 22353793 | T | A |
| Osa03LNT0223000.1 | 3 | 22353921 | G | A |
| Osa03LNT0223000.1 | 3 | 22354125 | T | G |
| Osa03LNT0223000.1 | 3 | 22354261 | G | A |
| Osa03LNT0223000.1 | 3 | 22354301 | T | C |
| Osa03LNT0223000.1 | 3 | 22354326 | T | C |
| Osa03LNT0223000.1 | 3 | 22354393 | T | A |
| Osa03LNT0223000.1 | 3 | 22354395 | A | T |
| Osa03LNT0223000.1 | 3 | 22354669 | T | A |
| Osa03LNT0223000.1 | 3 | 22352323 | T | C |
| Osa03LNT0223000.1 | 3 | 22348608 | G | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0223000.1 | osa-miR5525 | Cleavage | 4.5 | 16.186 | 1 | 22 |
| Osa03LNT0223000.1 | osa-miR5805 | Cleavage | 5.0 | 14.841 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR5815 | Translation | 4.0 | 18.241 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR6246 | Translation | 4.5 | 14.603 | 1 | 23 |
| Osa03LNT0223000.1 | osa-miR166b-5p | Translation | 4.5 | 19.254 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR398b | Translation | 5.0 | 21.438 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR162b | Translation | 4.0 | 20.852 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR167h-3p | Cleavage | 5.0 | 21.106 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR171f-5p | Cleavage | 5.0 | 19.777 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR395o | Cleavage | 4.5 | 14.046 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR815a | Cleavage | 4.5 | 13.048 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR1853-5p | Cleavage | 4.5 | 12.798 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR1857-5p | Cleavage | 5.0 | 15.09 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR1857-5p | Cleavage | 4.0 | 14.308 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR1860-5p | Translation | 5.0 | 19.764 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR1882a | Translation | 5.0 | 12.522 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR1882b | Translation | 5.0 | 12.522 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR1882c | Translation | 5.0 | 12.522 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR1882d | Translation | 5.0 | 12.522 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR1882e-5p | Translation | 5.0 | 12.522 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR1882f | Translation | 5.0 | 12.522 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR1882g | Translation | 5.0 | 12.522 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR1882h | Translation | 5.0 | 12.522 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR812g | Translation | 3.5 | 19.928 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR812h | Translation | 3.5 | 19.928 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR812i | Translation | 3.5 | 19.928 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR812j | Translation | 3.5 | 19.928 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR2878-5p | Translation | 4.5 | 11.772 | 1 | 24 |
| Osa03LNT0223000.1 | osa-miR3980a-3p | Cleavage | 5.0 | 15.697 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR3980b-3p | Cleavage | 5.0 | 15.697 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR5144-5p | Cleavage | 4.0 | 17.505 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR815b | Cleavage | 4.5 | 13.048 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR815c | Cleavage | 4.5 | 13.048 | 1 | 21 |
| Osa03LNT0223000.1 | osa-miR5495 | Cleavage | 3.5 | 22.797 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0223000.1 | 3 | qGL-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0223000.1 | 3 | qLWR-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0223000.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0223000.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0223000.1 | 3 | ccf3b | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0223000.1 | 3 | ccfs3 | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0223000.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0223000.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0223000.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ284 | RZ403 |
| Osa03LNT0223000.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ452 | RZ448 |
| Osa03LNT0223000.1 | 3 | nan | Morphological trait | Panicle/flower | RZ403 | RZ452 |
| Osa03LNT0223000.1 | 3 | An5(t) | Morphological trait | Panicle/flower | C1677 | R19 |
| Osa03LNT0223000.1 | 3 | gw3.1 | Morphological trait | Seed | RZ672 | RZ474 |
| Osa03LNT0223000.1 | 3 | nan | Resistance or Tolerance | Insect resistance | G332 | R19 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)