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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0223600.1

GTGTTATTACCCGTCATTGTTCACCAATCCAGAACATCTTTATACACGATATTTCTTGTGCTCCTTCTTGTGGGGTCCACCTTTTTTTTAAGGCTTTGCCAAAATCTTTGTCGTTTTCCTTGACACCCCTCTTGATAATGCAACATAAAGCTGCCCTTGCGAGAATACAGGCTCTCCTCTCGGTGGCGGAGGGAATTTGGGTTGGCTGTGGTGGCGCTTGAGGCGGAGGAGGTGGCAACAACGTGTTGGCGGAGCAGACCGGCGAGGGATGCAATGGAGTTGCGGTGCGGAGATCAGATTGGCGACGATATGCACCAGAATCCGAGCGATGGCGATCTGGCGGCGTGGAGATGGAGATGAGGGGCGAGATCGATCTGGACTGGATCCCTTGGAGAGAGCGGATAGTAGGACGATCCTGATGGAGAGCAACACTGATAGGGAAGGTAGAATTTTGCTTTGGTATATATTTAGCTCAGTATCTACCTACGGCCAGCGGGCATGCAGTGGGCAGCAACAGCAAGCCTTTTACCGTGAAATGAGATGGCAGTGAGATGGGTGGCGAGCAGGGACAGCGGTCAGGCCATCAGGATCGTGTTGGCGTCCTTATAAGGTCAGGCCATCAGGGTCGACGGTTGGTGAGGCGTTGATCCAGGGTCGTGTCGGCGTCCGGCGTTGATCGGCGTCCGGTCTCCAGGTGGTGCAGCATGATGGCGATGGCGAAGGTAGAGCCGTAGAGGTGCGGGCGCGGCGGCAGGGAGGGATGAGGGCGGTGGCAGGGAACGTTACGGCGGCAGGGGAGGGATGCGGTTCAGAGAGAGAGGAGCGGATCTGGGAGAGCGAGAGACGAGC

Coding Potentia
Explanation CPC Score
noncoding -1.31513
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0223600.1 osa-miR156j-3p Translation 5.0 17.736 1 22
Osa03LNT0223600.1 osa-miR167a-5p Cleavage 5.0 24.687 1 21
Osa03LNT0223600.1 osa-miR167b Cleavage 5.0 24.687 1 21
Osa03LNT0223600.1 osa-miR167c-5p Cleavage 5.0 24.687 1 21
Osa03LNT0223600.1 osa-miR167d-5p Cleavage 5.0 24.687 1 21
Osa03LNT0223600.1 osa-miR167e-5p Cleavage 5.0 24.687 1 21
Osa03LNT0223600.1 osa-miR167f Cleavage 5.0 24.687 1 21
Osa03LNT0223600.1 osa-miR167g Cleavage 5.0 24.687 1 21
Osa03LNT0223600.1 osa-miR167h-5p Cleavage 5.0 24.687 1 21
Osa03LNT0223600.1 osa-miR167i-5p Cleavage 5.0 24.687 1 21
Osa03LNT0223600.1 osa-miR167j Cleavage 5.0 24.687 1 21
Osa03LNT0223600.1 osa-miR1868 Cleavage 4.5 12.833 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0223600.1 3 nan Morphological trait Panicle/flower RZ403 RZ452
Osa03LNT0223600.1 3 An5(t) Morphological trait Panicle/flower C1677 R19
Osa03LNT0223600.1 3 gw3.1 Morphological trait Seed RZ672 RZ474
Osa03LNT0223600.1 3 nan Resistance or Tolerance Insect resistance G332 R19
Osa03LNT0223600.1 3 qGL-3 Morphological trait Seed R19 C1677
Osa03LNT0223600.1 3 qLWR-3 Morphological trait Seed R19 C1677
Osa03LNT0223600.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0223600.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0223600.1 3 ccf3b Physiological trait Source activity RM16 RM282
Osa03LNT0223600.1 3 ccfs3 Physiological trait Source activity RM16 RM282
Osa03LNT0223600.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0223600.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0223600.1 3 nan Morphological trait Shoot/Seedling RZ284 RZ403
Osa03LNT0223600.1 3 nan Morphological trait Shoot/Seedling RZ452 RZ448
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus