© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0224400.1
CACTTTCAATTTGAGCATTGACTGCAATAGGAAGCACAACCATTTACAACTTTTTTTCCCTTCTTCTAACCTGTTAACGAATGAATTATATTTTGAGCGATGGCTGCTTTCCCCCTAACAACTCGGGGAAACAGCGATCACAGGCTTTCACATGAATATTGCTGTACAAGCAAAAAGAGAAGGAATTAACACTAAGGTATAAAAAGAGAAGAAGAAAAAAGTCAATCCCCTGCACTCAGCCATTCTAGTACACGACAAGGTAAGAGATCAACAACTGCATTTTGCCGCCACATGCAGCAGGAGAACCCTTTCATCTTTCAGCCAATCCAAACCAAACTGAGTTAAACCATAACTTTCCCCCCACGGGAATGGTGGTTCCTAAAACGAAGCTAAGCTAAGTATTTACAGCACATGAGTGCACCACCTTAAAGCAGCTGGTCCTGAACAGCTGTCATGCCTGAATGTTCTTCACACGGAAATCATGCCTGAATGTTGTAAGATTTTGAGTGAATTTATCTCTGTTCTTTGGTTCCAAATTCGTAGCAACATCAGTCATCAGCTTGTCGAAGCATTGCGAAAGGCGTTGTTGCTGGTCTACAGGCTGTGATGCCAATATCTGTGCTCTCAAATTACTAAACATCTGTTCACTGATCATTATCAGACTCAGTATTGGTCTACTAAGACTCCACTGATTACCCGCATCCTCAAAGATGATGATCTCAAAAAGTGTCTTCAGTATCTGAGGAAATAAAGTGGGGAACTCTCCGATATGCCGAGCAAGATTTAGTGCAGCTGGTGAAGGAGGGCCATCAGCAGCTGTGAAATTGTTGAAATAAAAGGCTGCCAAGCTATCAATGGCAGAGGCACACTGTGTTGATATCCCTGTATCTAGACCTTTTAAGCCAGATTCAAGAGTGCTGACAATATGCACGAAGGTGTTTGTATCTAAATTGAGAACAAAAGTGATATGATTGCTGAACAGAACTTCAATATATCCATAGAATGCTTTCGACAGCTTTTTGAATGCCAATATGTCTGACAATGGAACTGAGAGGCTCATCTTTAAAGATATATCAAGAGCATCAGCAAGTGCTCTGTCACCATACAGCTCAAATACACCAAAGTTGACATAGTTTCCACATAAAGCTCTTGAAAGAACAGCAAGTGATATCCATATGCCTTTGTATTTACTTCCATAAATATCAGTGCCGTTTGGAAGTAACAGAATACGTGATCCATAAGCCACAATCAGCTTGCTAACCTCCCGGAATAAAAGGATCCCATTTGGTGATGACGAATCAAATGTCAATCTCTGAGCTTTGTTCAAAACAAACTCGCACATAAACTTGAGCAGGGGTGTGGTGACCTCTGGCTCATCAGCGTAGAGTGAGATGGCTTTCAATAAAAGTGGCATGCGAGATGGATACAGCCAGTCAAATAGGAGGCCATAGGTCCTGCGGCTGTTTGTGGCCATAGCAATGCCTCGTAAGTCTCTCATCAAACCAATAAATGCGTACTTCACAACATCAGTCCGGAAAGCAGCATCAGCAGTTGCCTCCAAATTAACTGCAACCTGTAGGAGTGGCTCCATGAAACTCCTGAATTTTACTGGGGTGTCTTCCATGAAAATCAAGCAGCCAAGGATGTAGTAGAAGGTTGTTCTACTGCGGGCACATCTGTATTCTTCAAGAAATGGAAAAGTCTCCCTAGAATGATTTGCAATTATAAATTTTGTACTCTCCAGCTTGAGAAGCAGTTTTCCAGTCATATAGCCAGATGCAAGTTCAAGGAAAAGGGACAGAGTATGATCAATAACATCCTCGCACTCAGCATAGCACTTCAGATTAGTTGCTATTTTCCCAACAATGACATTGAGTAAAACTAAATGGTCATTCAGTCCAAGAAGCTCAGATAATCTTGCATACAACTGCTTTGAAGAATGCATGGCTTGATCTCCTACATATGACCTTCTGAAATTTTGCACAAAGATAAGAATAGCACGATCAAGTCTTTGCTTACTTAATACTTGATATCTCTGTGCGTGCACCCCTGTGTCAGTAACGTTTATCAACTGTAACACACGGGCTGCAAGTTCTGCGTCAATTAACTCCTGTGATTCTTGGCTACAACCAATGGTCTGCCTAATCTTGAGAATGGCTGCAATTATGTGGACTAGCCATGTGAGCTGTCCTTCAATGACAGAGAGCTCATTCGCATCTCCAGGAGCTGGTAATCTTGACCTTTCCATATAAGCTTGTAGAAGAGGCTCCATAATATTTATGATGTAAATGCTACTGTTTTGGTACTGGAATCTACAAAGGTAAGGAAGAGACTCCAACTGCTCCTGAAGAACATCCACATTATCCAAAGTATCATCAGATGAGTCGTTTGCAAAGCTGGCCTGAACAGAATTAATTCTAGAGGTGATAAAACCCTCCGTGATTTTCGGAACGGTCTCATCAAGCATACTTGGTGTGTCGCCTTTCAAGTAAGGAACAGATGTCACCAGCCTTGACCAAAGACTCAAAAGATAGTAGACACTATTGCTGGCCCACTGCCATGACAACAGGGATTTAGTTGTGAATTCTGCTACTAAACCAATCCATTCACCATAAAACTCAATACTCAGAAGCTCTGACAACTGGAAATTCACTTTGAAACGTCCAAGAAGGCGGCAGAACTCATGGTAATTTCCATGATCAGCAAGACCTTGGCCAGTTTGGAGTATCTCCTTTGTGCCTGACATCAGATGAGAAAGAAACTGGGTCCTTGAAGGGTCCTCAACGAAAATACTGCGCCTGACAGAAGCAAGTCTCACAAGACATTCCAAAGCCTCTTTTGAAACACATGTATCATTGACTTTATAGTAATCGAAGAAGATCTGAACAGTAGAAGGATCTTGAAGGAGAGGCCTCCAAGATGCAGGAAGCTGCACTGTACCAAATTCCTCAGAGCTTTCATCCACAGGACAACCAACAAAGTCATATGACAAGCACCTTAATGCAAGCAAGAGAGGATCACGCCTAAAGTCATCAGGTACTTCACTCTTCAGTTGGTGTAATGAGGTTAAAGAAATTTGGAAGATCTGTAGAAGAAACTGGTCCTTGAACGAACAAGCAATTTTTCTGTGAAGTGTCAAAGGCATCGCGTTTGCCTGGTTCATTTCTCCTACAAGATGATATAGTATCTTCAATCCTATAAAATAATGATCCTGGGATGCAAGAGATAAGAAATCGGCTGCCTCCTTGACAATATCTCTGAATTTATCATCATCGAACCATCCAAATTTTGTAATTCGACAGACAAGCTGAATTAGGGATTTAATCACAAACGTCTGCAGTTTAGGTCCCCTCGTAGCAAGATAGTTTATGACATAATTCCGGATATCAAGGCGCAATTGCAATGAAAGACTGCGGTCGTTGACTTGGTTCAACAAGCTTGAACTGGCCAGCATCAGGGCATATGGTGTTGAGGCATTGTCCAATATATATTGGCACTGTGAAATGTAGTCACTGTTCTCCGAGAAGCACTTGAGGATGCTTTCAGCGTGTGCTCGCTCAGCAGAGTCTCTAGAATTGTAAAGCTTTTCACACAACAGCTCTAACTGTGCTAGGCTCTCCATTGATGACATGAATAAGGAGCTCCAATTTTCCAGTTGACCAAGTATCCAATGTTAATATGCCACCAGGTTCTGGATTAATATCCACGAATTTGCATGAATGTTTGTCACAAGCTTAGAGTTAATGCACTAGGTATTCGGTTCAACAGGAAACTTGAAAAGTACCATAAGAGCTTTGAAGCTGAAATATATGATTCTAGCACAGGAGAAGGATAGTCACAAACTCAATACATTCATATTACAAGAGAAATGTTTCAACAAAAGAGTTTTCTCATGTACAGTCTTTTCAATGACGCGTAATCAAAGATGAAGACCAAAGACACAAGAGAAAACAGCTAACAAGCTTATATCGCCAATACCAGCCACAACTCAGCCTGGGTAGAGTTATCGGAGAGCTCGACGGAGAGAACCGAAGAGGAGAGGGCGTGAGGAAGAAAACCGACGAAGAAGATGGGCTCAACGGAGAGAACGAGGACTTCACAGTGGAAGAGAAGGCGGGCAGCCGACGGATCTGAGGGGGGGCGACGGAGGGAGCCGGCGATGGAGGGGAGCCGGCGCCGACGCCCGGCGGCGGAGGATGAGGCGGCGATGAGCAGCAGCGGCCGAACCCTAAGCTTTTCTTTCGGTGGGAGGAAATGAGGAGGCGGAGAAGTAGTCGAGGCCGCGCGGTGACTTCTCTCGCTGCCTGGCTGCCTGCACTCGCGGCTCGCTGCACGCCTCGAGCGGCG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0224400.1 | 3 | 23369107 | T | C |
| Osa03LNT0224400.1 | 3 | 23370293 | T | C |
| Osa03LNT0224400.1 | 3 | 23370743 | G | A |
| Osa03LNT0224400.1 | 3 | 23370563 | C | T |
| Osa03LNT0224400.1 | 3 | 23371177 | G | A |
| Osa03LNT0224400.1 | 3 | 23372868 | A | T |
| Osa03LNT0224400.1 | 3 | 23373617 | G | A |
| Osa03LNT0224400.1 | 3 | 23374456 | T | C |
| Osa03LNT0224400.1 | 3 | 23375021 | A | G |
| Osa03LNT0224400.1 | 3 | 23375333 | C | T |
| Osa03LNT0224400.1 | 3 | 23375700 | A | G |
| Osa03LNT0224400.1 | 3 | 23376129 | A | C |
| Osa03LNT0224400.1 | 3 | 23376340 | A | C |
| Osa03LNT0224400.1 | 3 | 23376758 | A | G |
| Osa03LNT0224400.1 | 3 | 23377002 | T | C |
| Osa03LNT0224400.1 | 3 | 23378434 | A | G |
| Osa03LNT0224400.1 | 3 | 23378800 | T | C |
| Osa03LNT0224400.1 | 3 | 23379000 | A | G |
| Osa03LNT0224400.1 | 3 | 23379210 | A | G |
| Osa03LNT0224400.1 | 3 | 23379942 | G | A |
| Osa03LNT0224400.1 | 3 | 23380297 | A | C |
| Osa03LNT0224400.1 | 3 | 23381452 | T | A |
| Osa03LNT0224400.1 | 3 | 23383519 | A | T |
| Osa03LNT0224400.1 | 3 | 23373318 | C | T |
| Osa03LNT0224400.1 | 3 | 23372933 | A | C |
| Osa03LNT0224400.1 | 3 | 23382329 | A | G |
| Osa03LNT0224400.1 | 3 | 23369813 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0224400.1 | osa-miR5539a | Cleavage | 4.5 | 24.042 | 1 | 22 |
| Osa03LNT0224400.1 | osa-miR5516b | Cleavage | 4.5 | 22.479 | 1 | 21 |
| Osa03LNT0224400.1 | osa-miR6248 | Cleavage | 4.0 | 14.44 | 1 | 21 |
| Osa03LNT0224400.1 | osa-miR5539b | Cleavage | 4.5 | 24.042 | 1 | 22 |
| Osa03LNT0224400.1 | osa-miR396a-3p | Cleavage | 5.0 | 12.529 | 1 | 20 |
| Osa03LNT0224400.1 | osa-miR396b-3p | Cleavage | 5.0 | 12.529 | 1 | 20 |
| Osa03LNT0224400.1 | osa-miR417 | Cleavage | 4.0 | 11.087 | 1 | 21 |
| Osa03LNT0224400.1 | osa-miR417 | Translation | 5.0 | 15.063 | 1 | 21 |
| Osa03LNT0224400.1 | osa-miR529a | Cleavage | 5.0 | 16.908 | 1 | 20 |
| Osa03LNT0224400.1 | osa-miR444b.2 | Translation | 4.5 | 12.383 | 1 | 21 |
| Osa03LNT0224400.1 | osa-miR444c.2 | Translation | 4.5 | 12.383 | 1 | 21 |
| Osa03LNT0224400.1 | osa-miR1850.1 | Cleavage | 5.0 | 11.74 | 1 | 21 |
| Osa03LNT0224400.1 | osa-miR1866-3p | Translation | 4.5 | 17.753 | 1 | 22 |
| Osa03LNT0224400.1 | osa-miR1872 | Cleavage | 4.5 | 16.268 | 1 | 24 |
| Osa03LNT0224400.1 | osa-miR1320-3p | Cleavage | 5.0 | 14.233 | 1 | 21 |
| Osa03LNT0224400.1 | osa-miR1320-3p | Cleavage | 5.0 | 19.701 | 1 | 21 |
| Osa03LNT0224400.1 | osa-miR2105 | Cleavage | 4.0 | 9.926 | 1 | 20 |
| Osa03LNT0224400.1 | osa-miR2105 | Translation | 5.0 | 8.757 | 1 | 20 |
| Osa03LNT0224400.1 | osa-miR2870 | Cleavage | 4.5 | 12.445 | 1 | 21 |
| Osa03LNT0224400.1 | osa-miR5150-5p | Translation | 3.5 | 15.318 | 1 | 24 |
| Osa03LNT0224400.1 | osa-miR5508 | Translation | 4.5 | 16.05 | 1 | 21 |
| Osa03LNT0224400.1 | osa-miR5516a | Cleavage | 4.5 | 22.479 | 1 | 21 |
| Osa03LNT0224400.1 | osa-miR2275d | Translation | 5.0 | 13.214 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0224400.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ284 | RZ403 |
| Osa03LNT0224400.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ452 | RZ448 |
| Osa03LNT0224400.1 | 3 | nan | Morphological trait | Panicle/flower | RZ403 | RZ452 |
| Osa03LNT0224400.1 | 3 | An5(t) | Morphological trait | Panicle/flower | C1677 | R19 |
| Osa03LNT0224400.1 | 3 | gw3.1 | Morphological trait | Seed | RZ672 | RZ474 |
| Osa03LNT0224400.1 | 3 | nan | Resistance or Tolerance | Insect resistance | G332 | R19 |
| Osa03LNT0224400.1 | 3 | qGL-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0224400.1 | 3 | qLWR-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0224400.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0224400.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0224400.1 | 3 | ccf3b | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0224400.1 | 3 | ccfs3 | Physiological trait | Source activity | RM16 | RM282 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)