© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0020400.2
ACCTATAGTAAAGTTCGTCACACATTTGAATCTATGGCGTGGAAGAGAATTTTATTTGATGAGCAATTAACGAAAGGACAACACCTATGACTAGAAAAGTTTTGCTATATGCCTAATTGTACTGAACATACGGTTGCTAGCTAGAATGTTTCTAAATGATTTCGAGGCTTTGAGCTATATACATCTTCAAATGAATTGAAGTCCCAATTTCAGTATATGCTAAATACTTGATGCATGTCCAGAGAAGAATCACATGGACGGTGTTACCTTTTCTATTCATAAATGTACACCTAAATCTTCCTGCTTCTCTTGTATTTGTATGTGTTGAACTTCAATCTCACCAGAAACTGAATTGGTGGGGAATGGATCTGAAAGGTTAACTTTTCTGAAAGCCAAGTAGATCAGAGCAGCAATATAGGCTGCCATGAAAGGGAAAACAAGGCTGCTAATTATTGCATTAACAACCCTTGGAAGGTCGCTATGAACAAGCCAAGCGACAAAGCTAGTACAGAAGAAATAAATATTGATTCCAATAATCACCAATGACAGTATCCACGCGATTCGGATAATAGATGTTGCATTCTTGTATGGTCCTATATTTGTGCAGCTGCTACTGAATTTAATGAGTGGAATTAGAGCAAACGGCAGCACAAATGATAGTACAATCGCAGCTATGTTGATAATTCGATGCACTCGTAAAGTACCACCAATGCTGCAAATTATCAAACTAGGTAATAAGGTGAAACAAGGAGCAACAAGATATATGATGCACTTTCTCATTCCGGAGAAGCCCTGCATGATGTATTGGCCAGCATAACTCGTAGCCACCATGCAGCTCTGTCCAGAAACTAATAAGGCCACACCATACACAGTTGAACTTGATTTTCCCAAAATATTCTTGAGTAGTACATAAGTTGAATTCAATGTTAGACTGCTGCACGTGCTTGTGTCGGCAAATGAGAGATTGTTGGCACATATAGTACCAGATATTGATACAATAGCGACATTTACAAGTAGTGCAATGAACAGAGCTAATGCATTCTCAAGCAAGAAGAATGTAGAAGCATCCTTGCGTCCTTTGGAAGTATATGGCATTTTTCTCGTTAGCACCAAAGAAGAATGTAGGAAGAGATTATGCGGAACAACAAGAGAACCAAACATAGCAACCGCATCTGAAGTAGAATAATCCCCTTTGGGCCTTGGGATAAAAAGCCCCTCAATTACCCCACCAGCAGGAGGATTAACTTTGCCAAGTTCCATAAAAAAGCAAGTAGCCATCACCAACATAAGAACTGATATAGTGAACTCCATTTTCCGAGCCCCATATCCTTGTAACCCGAGAATTAGGAAAGTGCATGCCCCACATGCTAGGACACCGGCCCAGAAAGGGATGTGGAGTAGCATGTTGTAGGCTAAAGCAGTTCCTAAAACTCCTGGTATAGTGGCAGCAATAACACCAAGCTCTGCTAGTAACCATAGGCAGTACTTGACATACTTTGGATATTCACCCATGCACAACTCAGCGAGGTGCCTTCCTGTAATGATACCCAAATTTGCTGCCAATGATTGTACAGTCAACACAAATATGAACCCAAATAGGAGTACCCATAGCAACGAATATCTGTGGCTGGATCCAGCTACCAAATCAGTCTGCACTGTTCCAATTTTCAAAGTGAAGTAGTTCAATATATTAGTACTAGAAAAAGAAAACGGTGGTATATGAGCATGTCCTGCCTAGGAATTCTAGTGGTATCCATCCATGTTCCTTGATCCTATTGTTGAATTTACCAAAGCCATTTATGACTTAAAAATGTCTTTTTCTCACCATGCATGGATGGATGGACACAAACTGGTGAGCAGAGACAGGCATAGTTCTAGTCCAAGGAAGATTGAAGGACAAAGGGGACTTACAGTTACTAGGATCAAGGTATGCGATGGAGATAACAAATCCAGGACCAACATGTGCAAGAAATCTCTTCCAAGTGGGTGCCTGGACATCGCCGTGCAGACCGCCGTGTTGCCGCGACGGCGAAGCCCCTGCGGCTGCGGCGACCTCAATCTCAATCTCGTCCCCGCCACCGCCGCTGCCGCCACCGACGGCCGCGACCCTCCCGCTACCGTTCACCCTCCCGTGCTGCTGCTGCTGCTGCTCGTGCTCCCTCCCGATCTTCGCCCCCTCCTCCATTGCTCTGTCTCAGTAGCGCAACTAGTGGTGGTGGTGGTTGACCATTAACCTGAACCTGGCGAGGCCAGCACCAGCTCCGGTTGCCGCAAGAAAAGCAGCAGCTGCCTGCATGCAATACGGGTCAACTCCGCGATCCCTCTGCATATCTGTACTTCTCCCAACGTACACTCGGTGTATTCGAGATGCGACGCAAGCATCGAGGACGAAAGTCGTCGGCTTGGGGGCAGGAACAGCACTCACCTAACCCATTCCCTCTCTCAAAACCCC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0020400.2 | 1 | 17463993 | G | T |
| Osa01LNT0020400.2 | 1 | 17464889 | G | T |
| Osa01LNT0020400.2 | 1 | 17458668 | T | C |
| Osa01LNT0020400.2 | 1 | 17457356 | C | A |
| Osa01LNT0020400.2 | 1 | 17458093 | T | C |
| Osa01LNT0020400.2 | 1 | 17459259 | T | C |
| Osa01LNT0020400.2 | 1 | 17459557 | A | T |
| Osa01LNT0020400.2 | 1 | 17461872 | T | C |
| Osa01LNT0020400.2 | 1 | 17462563 | A | G |
| Osa01LNT0020400.2 | 1 | 17463385 | C | G |
| Osa01LNT0020400.2 | 1 | 17463459 | A | G |
| Osa01LNT0020400.2 | 1 | 17463759 | T | G |
| Osa01LNT0020400.2 | 1 | 17460055 | T | C |
| Osa01LNT0020400.2 | 1 | 17454369 | T | G |
| Osa01LNT0020400.2 | 1 | 17454831 | C | A |
| Osa01LNT0020400.2 | 1 | 17456083 | T | C |
| Osa01LNT0020400.2 | 1 | 17456293 | G | A |
| Osa01LNT0020400.2 | 1 | 17460193 | T | C |
| Osa01LNT0020400.2 | 1 | 17460315 | C | T |
| Osa01LNT0020400.2 | 1 | 17460580 | G | A |
| Osa01LNT0020400.2 | 1 | 17460587 | A | G |
| Osa01LNT0020400.2 | 1 | 17460617 | C | T |
| Osa01LNT0020400.2 | 1 | 17460976 | A | T |
| Osa01LNT0020400.2 | 1 | 17461137 | A | C |
| Osa01LNT0020400.2 | 1 | 17456609 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa01LNT0020400.2 | DTM_#DNAt_MULE_japo_Os0222 | Chr1 | - | 17459615 | 17461154 | 1539 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0020400.2 | osa-miR5821 | Cleavage | 4.0 | 15.279 | 1 | 21 |
| Osa01LNT0020400.2 | osa-miR1440a | Cleavage | 5.0 | 17.695 | 1 | 20 |
| Osa01LNT0020400.2 | osa-miR2864.1 | Translation | 5.0 | 16.248 | 1 | 21 |
| Osa01LNT0020400.2 | osa-miR2866 | Cleavage | 5.0 | 21.406 | 1 | 20 |
| Osa01LNT0020400.2 | osa-miR5076 | Cleavage | 4.0 | 15.383 | 1 | 22 |
| Osa01LNT0020400.2 | osa-miR5487 | Translation | 4.5 | 19.587 | 1 | 21 |
| Osa01LNT0020400.2 | osa-miR5518 | Cleavage | 5.0 | 17.206 | 1 | 21 |
| Osa01LNT0020400.2 | osa-miR5522 | Translation | 4.5 | 16.753 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0020400.2 | 1 | nan | Morphological trait | Root | RM23 | RM306 |
| Osa01LNT0020400.2 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0020400.2 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0020400.2 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0020400.2 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0020400.2 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Osa01LNT0020400.2 | 1 | qNVB-1-1 | Morphological trait | Culm/leaf | R2159 | C178 |
| Osa01LNT0020400.2 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)