\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0226600.2

TACCACCAACAGTTCTCATGCATCCACATTCCACTAGTACTGAATATACCAATTCCATTTAATTACAAATGCCATGTACATAGGTTAGTTGTACAAAAAGAGAAATTCTCCTATACAATCTACAAAATGAGACAAAACGATGGCAAATCTACAACAGGCAAGGCATTTCCCTTGTAGAGAAATGCCACTCCAAAATATCTTGTGACCGCCATGATAAGTTGAGCATCTAAAAACTTGAATCAGATTATCAGAAAGACAAAAGTATTAAGGGTCAGATATATAGATTATAATAATACTCCATTCAATGATAAGTAATCTATGCAACACCTACTATTTCAATACAGAATTGAAGATCAGTGTCAAATGTGCAGGATAAGTGTCAATAACATAACTGATGTAGTTCCATTTAATTCAATCTGTAGCATAGCTTCGATATTCTCACAATCCACCAATATTAAATTACCAGTTCCATTTTATGAGAAATTTATGTTGAAGCAGTATAATTGCAATCGTAACAGATTCAATTACAATTTACAAGCAGCAAGGATTGCAATTTATCTCACAAACTATGGGAACAAACTGATTTTAGCTTACATGATGTATGAGCCTTTAAGTTAGTGTTGATCTTCTGTTCCTTCAGGTACCCTTCTCTGACACTTCAGCAAGAAGTTGATTGCTCACCCACAGGTCGCAAATCATAGCCTAAACTCTTTTGCACCAGTATTAAGCATGGTTGCAATGCAAGTTTCCATCCCATGGCTATGAATGACAGCCCCAGCTCTCATCAAATAAGCCTTGGGTGCCCAGAGGCGGTCGTCGGCGGCGACCCAGCGCCAGGTGCTGCGTGCGTCCAGGAGCTCCATCACCCGCCCCATCACCTCCTCCCCGAGCACATCCACGGGGTCCTCTCGTCTCTGCCGCCTCCTCCTCCTCCTCCCCCTCTTCCGCCTCTCCCACTCCTCCGCCTCCCGCTTCCGCCGCCGCCGCCGCCCGCGCCTTGGTTGCCGATGACGTCGCCTGCACCTTGCTCGCCGCCGCCGCCGTCGTCCGCACCTTGCTCGCCGCCGCCGCCCGCACCTTGGCCGCCGATGCCGTCGCCTTGCCGCCGCCGGAGGAAGCGTGAGTGCGTGACGGCTGGGTAGGGAAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.564219
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0226600.2 osa-miR397a Translation 4.5 10.37 1 21
Osa03LNT0226600.2 osa-miR159a.1 Cleavage 4.5 16.691 1 21
Osa03LNT0226600.2 osa-miR159b Cleavage 4.5 16.691 1 21
Osa03LNT0226600.2 osa-miR159c Cleavage 3.5 16.691 1 21
Osa03LNT0226600.2 osa-miR159d Cleavage 3.5 16.691 1 21
Osa03LNT0226600.2 osa-miR159e Cleavage 3.5 16.691 1 21
Osa03LNT0226600.2 osa-miR159f Cleavage 4.5 16.691 1 21
Osa03LNT0226600.2 osa-miR1425-5p Cleavage 4.0 12.21 1 21
Osa03LNT0226600.2 osa-miR1871 Translation 5.0 14.706 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0226600.2 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0226600.2 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0226600.2 3 QFlw3 Morphological trait Culm/leaf RZ474 C746
Osa03LNT0226600.2 3 Yd3-13 Morphological trait Seed RZ403 CDO337
Osa03LNT0226600.2 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
Osa03LNT0226600.2 3 nan Morphological trait Shoot/Seedling RZ452 RZ448
Osa03LNT0226600.2 3 nan Morphological trait Panicle/flower RZ448 RZ403
Osa03LNT0226600.2 3 qSB-3 Resistance or Tolerance Bacterial blight resistance R250 C746
Osa03LNT0226600.2 3 nan Resistance or Tolerance Blast resistance RM16 RM168
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus