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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0226800.1

CCCACATAAAAAATTGATAAAGGGCTATTCCACTAACATGTGGGCATAAACAAGTAACCAGGTGGAGCAGGGCTGCTACAGCAAGTGATTGGAGCTTATCTTTCCCTGGGCGTTCGGTGTGACCAAGTAGATAGAAAGAGAACTTCAGAAAAGAATATCAACACAGATAGAATGAAATTTTTCTCTAGAAGAACAATACAGCTCGACCACAATGAGTAAATTTGAGGGAAAAAAATCAAATCTGCTCATAGATGGGGGCAGTAGGACGCGTGGAAGGGCTTCAATGTAACGGCAAAGATGTGAGGCGGCTATAGGTAGGACGGTGATAGTCAATACAGCAGGGATGCCAACCTACTTCTCATAGGGGAGGCTGTGCTCTCCATCAGTCTTCAGGGACGACGCAAGTCATCACTGTCGCTGCTGTTGATCTGCTGGATTGTACATTGAACAGCAACAAGATGAATTTCATGAGCATAAATGGTAAAATAATGTAGCTACATTCTCTTTCTGAATCTACCCAATTTAACTCTCTCGCAAAGTTGTATAGCCAATATTTTAAGCCATACTTTCCGTCTGAATAAAAAGATAAAAAGATAAAGTGTTGATCTCTCTGAATCCTAAACTTGAAAACAATATCGTGAGCCATAATTTCTTCCAAAAAAAGTTACAACCAGTAGTATTTGGATTCTTTTTACTGTATATTGACCTAGCTACTATTCTCTGCAAGTTTAAGATTCAGCCCTCCGTCTTTAGTCCATAAATGTTCCTCTTACTATTTTATTCTCTGATAACATCAAGGATGTTGGTGTGGAACCTCAACATCCATCATACAGGTAGTGAAACAGAACTATCTTAATTAGATAAATAACTATATGCTTCTTATACCTACTATCTTAACAAGAAGGATAACTACATGCTTTTTATACCTCAATTTGTCACCAGAAAGCTCAATTTCTATTGGGTCCTGTATGAACTGTAGGGGACGATCCTGGGTGACAACCAATTGCTAAACTGATTGGTGAATAATGTGAATGGACCTTTTTTTTCATTCAGTAGGCAAGCCTCAGTTTTCATAAATGTGTTTTTAGCTTCCTTCGTACACTTTAAATGAAGATGCAACAAAGAAAAAAAAAGGTTCATCATTATCCCCTTGTCCAAAATGCCAACTTTTTCAAATATGTTTTCCTCGTATTAGTCCAAAATGTTCTAGCTAAGAGCATCAGACAAAAACTTAATCAACGGTTGTTACCAATTCATGACCATGAAAAGGTTCGAGACGCAATCCAAATGACAAACATGAGATTTTGAAAAAAAGGAAATGGCCATGGCACATTTCTACTGAAGTAAGTATGTCTGTGGAATGCATGTAGCTATAAAAACCATTTGTTGTGATATAATATTTGATAGTGTACAGCTAACATGCAGTTAAATTCAGTAGTACTTTAGTGACAAGAAGAAATTTTTTACCATATCAAAAACCAAGTCCTAACAGCCAATGTCGAGCATAATTACAGAACATCTGTCGGCAGCAAGGCAGAAACATTTTCTCCTTGCAGCAGGTATGGACTGATAGTTTCAGCAAGGTCTGCAAATACACTGATGAAGGGCCTAAATACTTTCTGAGAAAAAGTAGTTAACAAGGTTACTATTCTAATTTCTCTGCCACTAAATTCAATTACTAAAAGTCAAACATGATTTCTTCAAATCGGAACTAATTTCAACAAAAAGAAAAGCAGAGCATTTCTGAATCTAACACCTAACAGTAGAGTATTTTCTGAAGATCAGTTCAGGAGCAATCAATTAATTAGTCCCAATTCTTGCATGGATTAGGATCACATAGATGGTCCATAGAGCAAATCTTAGGAGCTGACCAATGTTCATCTAAGTTGACCACTAAATGCTAATGAACTTAAAAATCCTAGAGTGTTTTAGACTTTCAGTTGCCATGGAGTAAGTTAGTATCTGATAGAACTGAACTTGTGGCCACATATTTTGTGAATTTGATGGTAGTTCGCATACCATCGATGGTAAACAACCCATATGAGCACCAAAAGGATTCATCACTGTGAGGATCACCACCACTGGGATTTGGGTCGCCGCCAACTGGGACAAAGTACATGGGCACAGTGCACCTCCAGGTCGCCATGCCCTTAACATAAGCAATCTAGTGGCTGATGACAAAATTCCTCCTTGTTGTGCTTCATGCGACCACCCGACACCGACCCCGCCGCTACACCCGCTCCCAGGCCGCACGAGCACGACGCCGAAGCGGCGGCAGTGGAGGGAGGCACCGCTGGCGATGGCAGAGGGGGAGATGATTGAAGACGTCAACCCGATGATCCGACGACGACAACACTCGCTCCAACGATGTCCGCCACGGGATGGGGTGATTGGAAGCCGGGATTTGGGGGTGGATTGAGACGGGATTTTGAGTTGGGGAGGCGGCTGAGGATGTTGGGAAGAGCCGCGGCGCCGACATGGATGGAGGAGGCGCGGGCGGCTAGGGCAGGAGGAGATGGGCAGCAGATGCGGCCGGGCGCGAGGGCAACGGGCAGATGCGGCAGGGAATCGGTGGTAGGCGGCGCGATGGAGAGGGAGGGGGCAACTCGAAGATGAGCGATGGGGGCACGATGCGGAGGGAGGACGACCGGAGAAGGAGGCGC

Coding Potentia
Explanation CPC Score
noncoding -1.32994
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0226800.1 3 26249155 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0226800.1 osa-miR5823 Cleavage 4.5 16.274 1 24
Osa03LNT0226800.1 osa-miR529a Cleavage 5.0 16.056 1 20
Osa03LNT0226800.1 osa-miR1425-5p Cleavage 4.5 22.032 1 21
Osa03LNT0226800.1 osa-miR1847.2 Cleavage 4.5 16.337 1 24
Osa03LNT0226800.1 osa-miR1865-5p Translation 3.5 19.397 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0226800.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0226800.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0226800.1 3 QFlw3 Morphological trait Culm/leaf RZ474 C746
Osa03LNT0226800.1 3 Yd3-13 Morphological trait Seed RZ403 CDO337
Osa03LNT0226800.1 3 nan Morphological trait Panicle/flower RZ448 RZ403
Osa03LNT0226800.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
Osa03LNT0226800.1 3 nan Morphological trait Shoot/Seedling RZ452 RZ448
Osa03LNT0226800.1 3 qSB-3 Resistance or Tolerance Bacterial blight resistance R250 C746
Osa03LNT0226800.1 3 nan Resistance or Tolerance Blast resistance RM16 RM168
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus