>Osa03LNT0227100.1

TTCTGATAAGCATGGTGATATGGATTCTTTTCAAAACAAGTGCAAACATGCCACCACAAAGTGCATCAAGAAACAGATTTTGTGATAAAAAGCTTCAACTCGGATGGCACATTATCAGGATTTACCCCAGGAAAGTCAAGCCTTAAAGCTTTCAGAGTACCAGCTGAAATAACAGGCATTGTATCAAGTAGCTAGAGACATGAAATCGAAACGAGTTCTTACAGGTAAAACTAGTAGCAACATCTACTGCTGCTTGACCTCAGCCTTCCTCTTCTGCCACAGCCTATCCAGAGCACTGTCGGCGTCTCCCTGAGCACGGATGAACCCAGAGAGAGCAAACGTGGTGAAGCGGCCATCGTACAGCCCATTCTCATCCACATGCCCAATGTTGATCTGGACCGAGGCATGGTCCTTGGCGGTGATGATCCTGTTGGTGGTCGAGCACTTCCTGGGGACGTAGAGGTCCACCATCTGACCCTCCTCGTTCTGCATGATGACGGTAGATGAAGAAAACACCACAACAGCAACTGATCTCCCGGAGAGAAGGGAAGAGAGACCGAAGAGAGCGGCGGCGGCGGCGGCGGCGGCGGCGTTTGGAGGGCGAGACCGCGAGAGGAGGCGAGATGACTCGG

Explanation	CPC Score
noncoding (weak)	-0.820426

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0227100.1	3	26309580	C	T
Osa03LNT0227100.1	3	26309820	A	G
Osa03LNT0227100.1	3	26310927	A	G
Osa03LNT0227100.1	3	26311535	G	A
Osa03LNT0227100.1	3	26309114	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0227100.1	osa-miR172c	Cleavage	3.5	12.699	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0227100.1	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168
Osa03LNT0227100.1	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168
Osa03LNT0227100.1	3	QFlw3	Morphological trait	Culm/leaf	RZ474	C746
Osa03LNT0227100.1	3	Yd3-13	Morphological trait	Seed	RZ403	CDO337
Osa03LNT0227100.1	3	nan	Morphological trait	Panicle/flower	RZ448	RZ403
Osa03LNT0227100.1	3	nan	Morphological trait	Shoot/Seedling	RZ403	RZ630
Osa03LNT0227100.1	3	nan	Morphological trait	Shoot/Seedling	RZ452	RZ448
Osa03LNT0227100.1	3	qSB-3	Resistance or Tolerance	Bacterial blight resistance	R250	C746
Osa03LNT0227100.1	3	nan	Resistance or Tolerance	Blast resistance	RM16	RM168

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus