\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0228000.1

TGTATATTCATTTGTATGCTTCTTTGGTCACTGTATGTATGTCCTATCTGCAAAACTTATGCAGTTTGCGGATTTACATCGGCGGAGGGTCCAGCGGGCTGTGGTGACAGGCCTCTCTTCTGTAACCTGATGATGGAACTGAGCGACCTCACTGCATGCCGTAGCCGGTTTACAGGGAGTCCTTCCAGTGTAGGGTGAGAAATGTCACTGGTTGTGGGTTGGTTGGTGTCTTCTTTGCAGCTAGATTCACCGGAACTTCCGCTTGCATCTGCATCTCTGTCAACGTGAACTCCTTTCAGAGGTATGTCGTCAGTGTCAGCAAACTGGCAGTAAGCAGAATGAAGACGGTGGTGAATGTCATCCATTCTTCCCGATTGCTCGTCCTCCCTGTCCATGTGAATTCATACTAACCTGTGCAGGGAGAGTCTTGAATAATGGCCGAAGACGATTGCTGCAATACTGGTTGAATAAAAGAGTGAGGATGATGAGAGGTACAGTGAAGCCTGCAGCTACTGGGGATTCTTTAAGCCCAAAGACACCAAGACAGATGATCTGGGTGAGCACAATAGAGAAGATTGTTGTATAGTGAGCAATCGGCCAATACAGACCACCTGTGTCGTATTTCGTGCAATAAACATTGAGGAACTGGTTGCGGTACACAACATAACCAAGAAAAAAGTACACCAGTAAAAAGGGCAAGATGAGAGGTGCTAATACAGAGCATGTGAATCCCAGTAGTCCAAACAACAGAACTTTTGGCACTTCAGTATGATAGGGAAATGACGGGACAAAGTAGCTATCCTCTTTCATTCTCAAAACATACTTCATTATAAAGTTCCATGTGAGACCAAAGAGTTGCATAAGTTCTGATGATAAACTAGCCCAACCAGAAGTCAGTACATAGGTGGTAAAGAATGTAGCCTGAGACAAATAAAAACAGTATTAAAAAATTATAGTAAAATTGAACAACACTATTAACAAATCAACAAGTTGTATATGCGTAACAGAAATACTTGCTGCATCCTGATAGCCAAAATAAGTGAGCATGCAATTCACCTGTACAGGTACCGCTCTAGCAAGCACCATAGGAATGTCCTTTGGGCTTGATAACGCATTCACTTGGCTAATTGCAGAACCTGATAGGACATTCACAAAGAATACATTCCAAATAGTGAAGTATAATACTTTACAGCAGGCACTTCTCTTCCTTTCACTGTGGGACACGGGTCCTTCTAATGTAGAAAAAAACATCATGGTTGGGGGAACAGTGTATAAAAATATTTGCAAGATGACACTGGGAAGGTATCCGGTCACTAGCTGGGTTAT

Coding Potentia
Explanation CPC Score
noncoding -1.30145
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0228000.1 3 26623828 C T
Osa03LNT0228000.1 3 26623990 A C
Osa03LNT0228000.1 3 26624303 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0228000.1 osa-miR5794 Translation 4.0 17.055 1 21
Osa03LNT0228000.1 osa-miR530-3p Translation 5.0 23.178 1 21
Osa03LNT0228000.1 osa-miR1429-3p Cleavage 4.0 23.891 1 21
Osa03LNT0228000.1 osa-miR1854-3p Translation 5.0 6.771 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0228000.1 3 qSB-3 Resistance or Tolerance Bacterial blight resistance R250 C746
Osa03LNT0228000.1 3 nan Resistance or Tolerance Blast resistance RM16 RM168
Osa03LNT0228000.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0228000.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0228000.1 3 QFlw3 Morphological trait Culm/leaf RZ474 C746
Osa03LNT0228000.1 3 Yd3-13 Morphological trait Seed RZ403 CDO337
Osa03LNT0228000.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
Osa03LNT0228000.1 3 nan Morphological trait Shoot/Seedling RZ452 RZ448
Osa03LNT0228000.1 3 nan Morphological trait Panicle/flower RZ448 RZ403
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus