>Osa03LNT0228100.2

GGACAGAATCATATGAATCATACTGTTCAAATATATTAATAACAGTTCAGGGAGTATATGTACAAGAATTACACACGCAAGGCATTTATGGAGAAAACAATGAAAACTAGATTTTCACCAACATAAAATAAAACTTACGATTGGAATATTGGGAATAGCATCTGTTAATGGTATAATGCCCTCTTCATTACTTCTTGTGTGGGATTTAATAAACAACGTGGGTCAACAAAGCATTTGTCAAGTGCCAAAACAGCATCAGACATGGACTTGCACTTGTCACCACCAAATCAACCAAGTCAGAACACACATTGTAGCAGTTAATGCAGCAGAGCAACACAAACGCGCCACAAGATACCTGCTTGACGTTAGGGTGCTTCTCCTTGCAGTCCTTCCCTAAGACTCACAGGGAGTAGACCAGGATGTAAAGGAAGAGGGTTCATTGCGATTGGGATTGGGATTGGCATTTACATGATGAAAGAGCAAACAAAAACTGGGAGCAGCTACACTACTGTAGGGCAATGCTAAGGATCACAAAATGGGAAGAAACCAAAATGAAAGGAGAAAAAAAGAAAGCAGGGTTCCCTAGCTTAACATGTCTCTCAGTCTCCACCAACTACATTTATCCTTAACCTTACCTACTACTCAACCAGCATGCCCTGTCACGTACTTAACACCAGCAGCAGCAGCACGCATTTCTCCCATGGCTAGATATTTTACATAATTGTACTTCTCTGGTACTGAGTCCTTGCGGAAATGGCTTGACGGATGGATAGATCATGGAAGAATCATGGATGGTGCAATCTGAGATGGAGTCCCAAGTCCAAGACAATGGAGTCATCTAGGATTGCAATGTCCAGCTCATGGAAAAATAAACGAACAAAACGGTGAGCGTTACGGTGCCATTCTAACTCCCAGCATGCGCAAGTTGAGGCCATGTTGCCGTCTGATATGATCCGGTATGAGTCTGTGGACGAGTTCTGGAGAGGCGCCAGTTAGTTCATGCTTGAAGTTGAACAGAGGAGGGAATGGACGACCATTTGCCATGGCAGGCGTGCATTGGGCTCTCGTAGCTCATCAAAGAAGGGATGTGCACATGCGTCAAGCGGTGGGATTGTGGGTATTCAGAAGGAAAGCAAACATCAAAGAAGAACAGACCATCATGATATGGAGTTTCAGCTGGCCCAACAATGGCAGCCCTCAGCAGATCAATCCTATCCTCATAAACTCTAACATAGATAGATTCAGGTAGATCTTTCTGTAGAAGCCTCCATTCATTTTGGATTGTCTTCACCCAATCTTTGGAGGTCTTCCCTGGTGAATTCTTTGCATAGTAATGGTCAGAAAAATCTTGAACAACATCAAAATGGCTAAACAAATTGCAACCATCACTTTCAAATCCATATTCTGTCCTTGTCATTGATGATATAACACTTGAACATTCAGGCTCATGTTTTTGCACAGATAGCACAGTACCATTCCCAGTTGAAAAGGGATCCAAAAGGCTGTTGTTTGTGCTGACATTTGCAGTGGGGTGTGGAGCGGCAACTTTCTTCTTGGAATCCTTCTTCTTCACACAAAACAGCTCGAGCACCTTGTTTAGAACCATCCTTAAAACCCGCTTCACGCAAAACGCACCTTGAGCGGAGCCAGCCCCAGAGCCCGCCACCGCGGCGGCCTCGGGGAAGACGAAGCGCGGGTGGAGGAGGCCGTTCGTCCATCGGCAGAATGCCACTCCCCTCGAGCCAGAACTCCGGCGTGCTCTGCTCGCCACCCCAACCGCCGCGGCCGCCATCGCCGCCGGGGGGACCGGGAGCGCGAGCGCCCGAGAAGATCGCCGGATGGAGATCGCCGCCCCTCACCAGGATCCTCTCCTCTCCCCTGCTCTGCTCGCCGGATGGAGATCGCCGCCCCTCACATGCTCAACCGCGACTCGTCTTGGCGGCGGCGCAAGCAGCGGAGGAGACAACCGGACGGGAGATTTCTC

Explanation	CPC Score
noncoding	-1.23961

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0228100.2	3	26921336	A	G
Osa03LNT0228100.2	3	26919103	T	C
Osa03LNT0228100.2	3	26919148	A	G
Osa03LNT0228100.2	3	26919317	A	G
Osa03LNT0228100.2	3	26919761	G	C
Osa03LNT0228100.2	3	26921632	C	A
Osa03LNT0228100.2	3	26923195	T	C
Osa03LNT0228100.2	3	26923209	T	C
Osa03LNT0228100.2	3	26924477	A	C
Osa03LNT0228100.2	3	26921897	T	G
Osa03LNT0228100.2	3	26921649	A	T
Osa03LNT0228100.2	3	26918973	A	C
Osa03LNT0228100.2	3	26919912	C	G
Osa03LNT0228100.2	3	26919938	A	G
Osa03LNT0228100.2	3	26920028	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0228100.2	3	nan	Morphological trait	Shoot/Seedling	RZ403	RZ630
Osa03LNT0228100.2	3	nan	Morphological trait	Shoot/Seedling	RZ452	RZ448
Osa03LNT0228100.2	3	nan	Morphological trait	Panicle/flower	RZ448	RZ403
Osa03LNT0228100.2	3	qSB-3	Resistance or Tolerance	Bacterial blight resistance	R250	C746
Osa03LNT0228100.2	3	nan	Resistance or Tolerance	Blast resistance	RM16	RM168
Osa03LNT0228100.2	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168
Osa03LNT0228100.2	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168
Osa03LNT0228100.2	3	QFlw3	Morphological trait	Culm/leaf	RZ474	C746
Osa03LNT0228100.2	3	Yd3-13	Morphological trait	Seed	RZ403	CDO337

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus