© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0228600.1
GTGCAGGGAACGCTGGGCACAATTTCCTCGTAGCATCAGATAGAACAAGAGTGAAAAAACAACATATTTGCTCATTGGTCCGGTCGTACTCCCTCTGTCCTAAAAAATGATAAACCTGAATTTCCGTGTCTAACGTTTAACTGTTCATCTTATATGAAATTTTTTTATAATTAGTATTTTCATTATTGTTAGATGATAAAACATGATAATACTTTATGTGACTTGTCTTTCTAATTTTTTTCATAATTTTTTTAAATAAGACGGACGGTTAAACGTTGGACACGGAAACCCAATATTTGTCTTTTTTTGAGACGGAGGGAGTAACTCGTAAGGGTCCCATCAAATCATATATAAATTGGTTCGCGGCCACTTATTATGTCAAACAGCGAATGTGCACTCTATAGGGCATGTAAGCATATTGGTATACTGTATTTCATAACTCGAAATTAACGAGAATAAGCAGCCTGTAGAGCATTTGCCTTTTCGGATGCGACTGAAGCATCTGCAGCTCTGCCATGCAATGAGTATGCCTTCTCCAGCAAGCGCCACAAGAAGGGTGCACCCTCTCGTTTCCTAATTTGTTTCTCGAGCACCTCAATTGCTCTGGAACTCTCTCCGGTATTTATTAGCACAGTGTACCAAACTTCATTGAAGACATCCACTTGCTCATCTGATGCCCCAATCATTTTACAACTGAGTGCATCGAAATCTGGACCCAAGATGTCAAAGACTTTCTTGTGCTCTCCTTTTCCATATTCATACACAGCCTCTGCTAGCTGGATTGCCTTTTGCATCACTTGCTGTTTTTTTGTGTCCATCGAACTAACTCTTGACCTAAGTGATTCCAACAAGTTGTCTGCTCTTGTAATCTCACCCATACTTGACAGTGCCCATAATACAAGTAGATCAAGGAGCCATTCCACATGCCATATTTTCTCATTCGTAAGTGCATCTAGCAATGCTGCCAATCTATCTTTGGCCAGATCAACCTGACCACGAATATGCAAACGGAGTAGCAGCCCTAGTGCATTAAGGTACACCTCTGCTGCCTCACAATCACTTTTCTCAAGCTCTGTCATGAAGTTATGATCGTATATCTCCAGAACTTTACTTGTAGGGAATTCACCTTCCAAGTAACAAACAGCAACATGCCACCAGTTGTGGGTTAGCATAAACGATGAGCATGCTGCCCATGATGGAGAACACGATTTCATGAACTCAGTAGCTTCTTTGAAATGGCATTCCTGCTGGAAAACATGGCACAGATTATGCTGTGACCAGCAGTCGTTCTTGTTTATGGCCAAGCCTTTCCGAGCAGCTTTTTCAGCGTCATCCATCCTTCCAAGTTCTAGTAATGGGAAAGCAAGCATGCCGTAAATGTAGTTCTGGTCTTGATTCTCTGTTCAACAAATTTGAGCGATGTATCAGGGCGTCCCATGTAGAAGCAGATGAGCTGAGCTCTCTTTAGAGACATGAGATCCCTGGGGAATTCCTTCAGCAACTCGAAGTGCCGCTCGATCGCCACCTGCTCGTCCCTCTCCTCCCCGATCAGCGCCGACAGCGCGCGGAACACCGCCCTCTCGTACTCCGTCGCTGCACCGAGGTTGTCGGCGGCGGCGGCGAGGAAGGCGGCGGCCCGGGCGGGGTCCCGCGGGGCGACGTGGTGCGCGGCGAGGGAGGAGGCGAGCGCGCACCGCGGGTCGGCGGCGGCGGCGCGGAGCACGGCGTGGCCACGGCCCCGGCCGAAGCTCATGGTGTGCGCGTAGTGCTCGTCCAGCGCCGCCGCGCAGCCCCCCGACGCCGTCCGGTACTCCTGCCCCCACATGTCCCTCCGCACCTCCCCCTCCCCCTCCCTCGCCGCCGCCGCCATCTCCCCCCGCGCTCTCGCCGTCGCCGTCGCCGTCGCCGTCGCCGTCGCGTCGGCTGG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0228600.1 | 3 | 27547001 | T | A |
| Osa03LNT0228600.1 | 3 | 27547380 | G | C |
| Osa03LNT0228600.1 | 3 | 27548240 | T | C |
| Osa03LNT0228600.1 | 3 | 27548383 | G | A |
| Osa03LNT0228600.1 | 3 | 27548948 | A | G |
| Osa03LNT0228600.1 | 3 | 27549160 | A | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0228600.1 | osa-miR812r | Translation | 4.0 | 7.962 | 1 | 24 |
| Osa03LNT0228600.1 | osa-miR812s | Translation | 4.0 | 8.073 | 1 | 24 |
| Osa03LNT0228600.1 | osa-miR5799 | Translation | 4.0 | 8.073 | 1 | 24 |
| Osa03LNT0228600.1 | osa-miR5807 | Cleavage | 5.0 | 7.15 | 1 | 24 |
| Osa03LNT0228600.1 | osa-miR6247 | Cleavage | 5.0 | 17.454 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR6248 | Cleavage | 5.0 | 11.629 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR164a | Translation | 3.5 | 15.496 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR164b | Translation | 3.5 | 15.496 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR164c | Translation | 4.0 | 15.496 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR164d | Translation | 3.5 | 15.496 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR164e | Translation | 3.5 | 15.496 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR169d | Cleavage | 4.5 | 14.871 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR164f | Translation | 3.5 | 15.496 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR812a | Cleavage | 3.0 | 8.166 | 1 | 22 |
| Osa03LNT0228600.1 | osa-miR812b | Cleavage | 3.0 | 8.166 | 1 | 22 |
| Osa03LNT0228600.1 | osa-miR812c | Cleavage | 3.0 | 8.166 | 1 | 22 |
| Osa03LNT0228600.1 | osa-miR812d | Cleavage | 3.0 | 8.166 | 1 | 22 |
| Osa03LNT0228600.1 | osa-miR812e | Cleavage | 3.0 | 8.166 | 1 | 22 |
| Osa03LNT0228600.1 | osa-miR1439 | Cleavage | 3.5 | 13.747 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR1851 | Cleavage | 4.5 | 11.596 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR1866-5p | Translation | 5.0 | 18.938 | 1 | 24 |
| Osa03LNT0228600.1 | osa-miR396f-3p | Cleavage | 4.5 | 14.079 | 1 | 24 |
| Osa03LNT0228600.1 | osa-miR812k | Cleavage | 4.5 | 8.183 | 1 | 24 |
| Osa03LNT0228600.1 | osa-miR812l | Cleavage | 4.5 | 8.183 | 1 | 24 |
| Osa03LNT0228600.1 | osa-miR812m | Cleavage | 4.5 | 8.183 | 1 | 24 |
| Osa03LNT0228600.1 | osa-miR812o-5p | Cleavage | 1.5 | 13.9 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR812o-3p | Cleavage | 2.0 | 8.569 | 1 | 24 |
| Osa03LNT0228600.1 | osa-miR5519 | Cleavage | 5.0 | 16.003 | 1 | 21 |
| Osa03LNT0228600.1 | osa-miR1437b-5p | Translation | 5.0 | 20.558 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0228600.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0228600.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0228600.1 | 3 | QFlw3 | Morphological trait | Culm/leaf | RZ474 | C746 |
| Osa03LNT0228600.1 | 3 | Yd3-13 | Morphological trait | Seed | RZ403 | CDO337 |
| Osa03LNT0228600.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | C136 | R1618 |
| Osa03LNT0228600.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ403 | RZ630 |
| Osa03LNT0228600.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ452 | RZ448 |
| Osa03LNT0228600.1 | 3 | nan | Morphological trait | Panicle/flower | RZ448 | RZ403 |
| Osa03LNT0228600.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | C136 | R1618 |
| Osa03LNT0228600.1 | 3 | qSB-3 | Resistance or Tolerance | Bacterial blight resistance | R250 | C746 |
| Osa03LNT0228600.1 | 3 | nan | Resistance or Tolerance | Blast resistance | RM16 | RM168 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|---|---|---|---|---|---|---|
| Osa03LNT0228600.1 | osa-MIR812e | 80.24 | 167 | 7 | 170 | 5.98e-28 | 121 |
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)