© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0228800.1
TTTGGAATCCAAATACTTCACCATTCACCCTTTCTTTTTTTTTTTACACATTTAATTTTGCGCACGACCAAATTTGGTCATGAAGAACAATAAAATTGTCCCAAACCAAACACCTCGACTCCTCTGACATATACATTATTACAACAGACTTACAATATGTCACATTATCGTGAGATCAAACCATTTCATTTCCAGCATCGAAATGAAGCTTTGTACTTTTAATTATTATTATGTTTACAGTTTAGAGTATTTCTTGAGCGCCTCCCCTGCATTTTTCACGCTCTCCGGCACCGGCAGATTGCAGAGAAGAGTCACCCTGGATTCAGAGATCTGAGCCCCCTTCTCCTTCGTGGATGGATCCAATTTCCACAGCTTCACCGCCCACACCTTCAGAAGTTCAGAACTTCAGATCCATTTTATGATTCCAACACAATTAATTATTCTTTTAATTACTGCCAATCATCAGGCTGAAAGCTCCTAAAAAAATACTAGACATGTGAAATGTACGGAGGAGAAGACTTAATTTTTATTGCTACATGTTGAATTGGCTAGCCTGGAGATAAATTATTTTGTCTATGAGGCTGTGCTTGTCTGGGACAAGTTGCAGCCTAGCCGTGTGTATCTTATCCTCTTCATAAGAAGATTGAGAGATCAGCAGATCGACATGTTGCAGTGTTTTATTATAAGAGTAACATGGTCAACCAATCCAGATTGCTGTCACTACAACTTCTTTTTTTCTGTATTAAAATGTCATTTATTTTTCTCAAATACACATCTCTAGCTGTGTAGTAGCTGACAACTACCCCATTGATTTGTGCCCATAACTTATCAATTTTGATCACAAACAGTCTACAGTCCTCACCGATCTTGGGAGAGAAAAATACATTGGTTGCCTGTCGCTTTTGGCTGTACCGGCTTGTTTCCCCGGGCTCAAAGTTGACCATAAATGATACTCTCTCCATTTCAAAATATTTGACGCCGTTGTTTTTTTTAAAAATGTTTGACCGTTCGTTTTATTCAAAAAATTTAAGTAATTATTAATTCTTTTTGTATCATTTGATTTATTATTAAATATACTTTTATGTATATATATAGTTTTACACATTTCACAAAAGTTTTTGAATAAGACGAACGGTCACATATTTAAAAAAGTCAACGGCGTTAAAATGGTTAAATATTATATATCATTGTCCTATGCTATTCCCATAACGATGAAATCTGTACTAGCACTGTGTGATACCTGACATTGTCGATGGAGGTAGGCCCAGTAAGCAAAGATCTAGGAGTACTATAGTAAACAGCAGCATCATAGTTTGCTCTTCAGTTTATTACTTGGACTGAGAAACGCACTGGGGTATTCTAGCTAGCTCCACAAGGTGGGGTGGTGGGCTAAACGATTTGGGTTCAAAGCCTCACCCCTTCTAATTATTTGATACTACTCTATAATATTTGCGTTTTTTTTGTTTATTACTCGGACTCTCGGAGTATGGTGCTTTTTCATCGTAGTTTATATTTTAAGCATTGGCTTTTAAATTATTGAGTGTGTTTGAGAGGAGATGAAAATAAAAGATTAAGAAGATACGCAAATTTAGGTGATTATTGCATAATTAATTAAGTATTAATTATTTTAAGCATGAAAAATGAAATAATATGATTTTTAAAGAGACTTTTCTATAACTTTATAAAAAAAACATATTGTCTAACAGTTCGGGAAGCGTATGCGAAAAAACAAGGCTCTTTTCATATCTATCTCGGATACTCTCAAACATAAAAGTTTTTACTATATTTCTATATATCTCATAATGAATTATATGCGAAACGAGAGGAACCCATCATCAACAACTTCGTATGGGGATTTAAGAGGCGGCTCGCTTGCATCATTAGGTATGGCCAGCACGCACGGAATGACAGGTGGTGGTGCCTTGTCTTAATCAAGTGGTACTAATCCGGCACCTACTGATTAATTAATCGGCGTGGTTAAAGCAGATTAAACTAGGGGTGTGGGTAATTACTACTAGTAATTAGTGATGAACTGGCTGGACGGATGAGTTAGTTGACTTGTGGTACTAGTAAGCAACCAATTGGAGAATAGTGTAGTGAGAAGTCACCGATGGAGTGGTAGGTTAGGTGATGGGCGATGATGAGGTAGGTAGGTAGCTAGCATAGCAGCAGAGAAGAGGAATTGAGGATGATGGGTGAGGTTACCTGGGTGGAGCGGCCGACGTGGAGCGGGGCGGCGCGGACGAGGACGGTGTCGCCGAGGGCGGCGCTGCGGAAGTGGTTGATGCTGAGCTGCACGCCGGCGACGCGGCTGTAGCCCGACGCCATGTGCGCCCCCATGCTCGCCAACCCCTCCGCTATCAGCGCCGACACGCCGCCGTGCAGCACCTTGAACGGCTGGCAGCAGGTGGGGGTGACGAGGAGGCGGCCGGTGACCTCCGCGGGGGAGACCCGCTCGATCTCGAACCCCATGGCGTGGAGCGCCGCGTCCAGCTCCTCCGTCTTGGGCCGCGGCGCCCGCGACGACGACGACGTGGCGTCGTCCATGCCGGAGCCGGACCGGGTAAACGGAGGCGGGAGACTGCTAGTAGCTTGGAGGAGCACGCGCGGGGAGCAGTAGCGAATTGAAGCTACGCTATCTCTCTCGGGGTCGGGGAGGGAGCTGAGCCTGAGCGCGACAGAGGGCGTGGGGGGAGGAGAGGAAGCCACGGAATTTTGTTGGGTCGCTATTATAGATGGACTGGCCGGAACAGACCGGCGGACGGCGGAGGCC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0228800.1 | 3 | 27645638 | T | A |
| Osa03LNT0228800.1 | 3 | 27645637 | A | T |
| Osa03LNT0228800.1 | 3 | 27645492 | G | A |
| Osa03LNT0228800.1 | 3 | 27645625 | T | C |
| Osa03LNT0228800.1 | 3 | 27645805 | T | C |
| Osa03LNT0228800.1 | 3 | 27646098 | T | C |
| Osa03LNT0228800.1 | 3 | 27646434 | T | C |
| Osa03LNT0228800.1 | 3 | 27646521 | T | C |
| Osa03LNT0228800.1 | 3 | 27645671 | A | T |
| Osa03LNT0228800.1 | 3 | 27646845 | A | G |
| Osa03LNT0228800.1 | 3 | 27645601 | C | T |
| Osa03LNT0228800.1 | 3 | 27645160 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0228800.1 | osa-miR812s | Translation | 3.5 | 6.228 | 1 | 24 |
| Osa03LNT0228800.1 | osa-miR5799 | Translation | 3.5 | 6.228 | 1 | 24 |
| Osa03LNT0228800.1 | osa-miR812a | Cleavage | 3.0 | 5.635 | 1 | 22 |
| Osa03LNT0228800.1 | osa-miR812c | Cleavage | 3.0 | 5.635 | 1 | 22 |
| Osa03LNT0228800.1 | osa-miR812e | Cleavage | 3.0 | 5.635 | 1 | 22 |
| Osa03LNT0228800.1 | osa-miR2874 | Translation | 5.0 | 18.697 | 1 | 24 |
| Osa03LNT0228800.1 | osa-miR2922 | Cleavage | 4.5 | 9.948 | 1 | 20 |
| Osa03LNT0228800.1 | osa-miR2929 | Translation | 4.0 | 12.274 | 1 | 21 |
| Osa03LNT0228800.1 | osa-miR395x | Cleavage | 4.5 | 6.258 | 1 | 21 |
| Osa03LNT0228800.1 | osa-miR812o-3p | Cleavage | 5.0 | 8.297 | 1 | 24 |
| Osa03LNT0228800.1 | osa-miR812b | Cleavage | 3.0 | 5.635 | 1 | 22 |
| Osa03LNT0228800.1 | osa-miR812d | Cleavage | 3.0 | 5.635 | 1 | 22 |
| Osa03LNT0228800.1 | osa-miR3982-5p | Translation | 4.5 | 15.68 | 1 | 21 |
| Osa03LNT0228800.1 | osa-miR1439 | Translation | 2.5 | 10.895 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0228800.1 | 3 | qSB-3 | Resistance or Tolerance | Bacterial blight resistance | R250 | C746 |
| Osa03LNT0228800.1 | 3 | nan | Resistance or Tolerance | Blast resistance | RM16 | RM168 |
| Osa03LNT0228800.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | C136 | R1618 |
| Osa03LNT0228800.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0228800.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0228800.1 | 3 | QFlw3 | Morphological trait | Culm/leaf | RZ474 | C746 |
| Osa03LNT0228800.1 | 3 | Yd3-13 | Morphological trait | Seed | RZ403 | CDO337 |
| Osa03LNT0228800.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | C136 | R1618 |
| Osa03LNT0228800.1 | 3 | nan | Morphological trait | Panicle/flower | RZ448 | RZ403 |
| Osa03LNT0228800.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ403 | RZ630 |
| Osa03LNT0228800.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ452 | RZ448 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)