>Osa03LNT0229100.2

AAGGAACTCATGCCTCAGGTCTGGGGCTTCCCTGTAATTCCCGTTAAGAAAAAAAAAAGGTATTTACATGCGCAAACTCCTGTAAAGAAAAATGAATCCTATAAAATCGTTGTGTAAACATAATCAGATGTTTTCTCGTGGTATGCACGGATGATGGGTATAAACATCTAAACATTTCTACGAGTTACAACTTACAATCACCTAACTAGTATCCAAGGTATGGGGCAAATCACCTAATTAGCCACTACATGAGGATAGCTCATTGCTACCCTTTCTGTCGCATAGGATTGCAGAATCCAATTCATGTTGCATCAGCCAGAGTCCAGGGCCGCCTTGTTCGAGGAGCTAAACATGCCCCAGGATGCAGTGACAGGTTAGCTGCTTGCGGTCAAAATTATCTTGAGAGATTATGGTCACATGTATTTACTCCTCAACCACAATACTATCAAGAAGAGGATGCCCCAGATGTGTGCTGCCACTGAGCATTTTGCCATTCAGCTGACCCACTAGTCGACTGGAGCTCAGTTGTCACATTATTGCCGTTCTCCTCAAGTAAAAGATCTTGTCTTGTTATTAATCCAACAACACGAGAAGGCCGTGGAACAACAAATATATGTCGCAATCCTAGTTGGCGGAAGAGATTGTACACCTTTGCTAAGGACATGTCCTCTGGCACTATATAAGGAGAAGGATTTAGAAATGGGGCGAGATCCAAATACAGCCCTAGCTCATCTTCTGTCAAATGAATATCATCAATTGACTTTCCTTTACTCGATGCTGGTTTAACAAAGTCACTTGTATTGTGCCTGTTGAGTATACCAGGTCCACAAGGGAAAGGACTATTCTGGAAATCTACTTTAGATTGCAGAAGTACAAGTAAGTGACTACGAAGTATCAGACCTATGACAAGTGACTCGCCATTCTGCCCACGATCAACAACAGGGAAGCCATTATGCTTGTTGCTTCGCAAAACAGAAATAATATCAACAATTCTTGAAACGCGAGGAAGGGACACAACCTTTTGATTCTTGCAGGCATCCTTCGCACTCATATTTCTCATAACCTGTTTGGGTCTTGAGTCAAGTAAAGGGATGCCCCTTAATTGGGCTTGCACTTCATACAGCCCTTCATTAAAAAAGTCACCCACGGCCTTAGAAATCAGAAGCACAAGCATGATTAACGGCAGGAGTTTCAAGTTGTTAGTAATTTCAACCATTATAACACATAAAGATACAGTCATTCTCATTGAGCCACCAAGAAAGGAAGCAGCACCAAGTAGAGCATACGTGCCCTCCTCAACATTTAGCTTCTTATAAAACTTAACAACAAACATTCCAACAAGCCGGCCATATGTTGATCCGATCATTATTCCTGGAACAAATTGACCAGCTGGAACAGCGGTTCCAAATGTCACGACAGCTAAGGAGTAAAACATGACCAGGAAGGTGATAAGGCTTTGTGCACTGTATTCATGGAATGTTTTTGCACTGAATAGATTACGTATTGCATCATCCTGAGTATTGAAGAAAATGGTTGCTAGGTCGTTGTATTCGTTATCTTTAGAACAATAAAAATTGACAAAATTCCCATCTGTTCCAGGTGGCCGAGGGCATTCGATGCCAGAATTAGTTTCTAACTGAGGACATGAACTGCATTTCCTCATCAATGGCAACACAAAGGAAATTGTGGATGTAACCAAAGATATAAGGCATGCTTCAAAGATCTTCACTCGTTTCCCCTTTTTGTGAAGATATGTTCGACGCCATTTAGTTATATACAGGGTAAGTTGATTGAATAATGCCCCTAGAAGTCCACCAATAACACCAATAATTGCCATAGGCAATAGTTCTTGGTAGGAGTAATCTTCTTGGCCTCCAGATATGTCCCAGATTATGAAACCCCCAGATCCAAAATGACCACACTTTCCACTCTTGCACCAGTTCATTGCTGATCGCACCACAACAGCCACAACAGCAGATGTAAAGAATACTCTCCACATAAGATGACTTCGCCACCAGGATGTAACTTCCTCCAGGGCAAATAGTACCCCACCAACCGGAGCTCTGAATGCTGCAGCAACCCCAGCTGCACATCCACATGTCACAAGGTCTCGCCGATCTCGGTCGCTTTCAAAAATCCGTACCCACCTAGAACTCAAATGGTATTTTGCTGATCCACCCTGTCCCAGAAGAGAAGCGATGCATGCCCCAGTATGAACAAGAGGCCCTTCTTTTCCTAGAGCCAAACCTCCTCCAACTGATCCAATGCTCCCAAAGATCTTCCCAACTAATGTCCTGAAAAGGAGGATTCCATGTGTATCCACTCCATTTAAGTAACCTTTGATCTCCGGAATACCAGATCCAGCTGCTGCTGGTGCGAAGTTTGTTACTATGTATACAGATGAGAAGACGAGGGCTAAATTGAAAACTATGTACACAAAGAACCCAACAAAATACGAGTGCTGTATTATAGCAAATGTTGCAGCATATTTCCAGCCGGAGAAGTTTTCAACCGCCAGATTAATAAAAATAGCAGCCAATCCAGTACCGACGCCGATCAGCAAGGAGAACAGCCACTTGAGCATGACGTAGTACGGCACCCAGAACTTGCTCCGCTGCGCCTGCTCCTCCCGGTAGGCGTAGTTCTCGATGACCTCGTAGTCGAGGCTCTCGACGCCGCCGGCGAAGAGCTCGTACCCTGCCGACGAGGGGGAGGCAGGGACGGGCCCGGGCCCCTCCGCCCCTGCCCCCGCCCCGTCGGCGGTGGGGAGCCGCGTCCACGCCAGCCGCGCCATCCCGATGCCGTCGGGGAGGTCCTGGTCGCCGGAGAGCATCGGATCGGGGGGGACCCCGCCCCCGAGATGCGATTCCAACGGCTCGACGACGGAGAGAGGTGGGGGGGAATTTTACTGCGCGGGTGTGGGGAAGAAGGAAAGCTGAGCCAAGAAGACTTGCTGGTTGGTCAAATCTGTGGTGTGGTGTGGTGTGTGTGTGTGTGTGTGTTTTGGGCGGGTGTGGTTTGTGCCGTCGCCTCGTGCGCTCGTCGGCGCGGTCGGCGTCGCGGGGTCGACGGCGTAGTGCGTGGCTTGGCTCCGGGATCTGAACCGCGG

Explanation	CPC Score
noncoding	-1.1861

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0229100.2	3	27862034	A	C
Osa03LNT0229100.2	3	27864621	T	G
Osa03LNT0229100.2	3	27865496	G	T
Osa03LNT0229100.2	3	27865874	A	C
Osa03LNT0229100.2	3	27866010	T	G
Osa03LNT0229100.2	3	27866313	T	A
Osa03LNT0229100.2	3	27867393	C	T
Osa03LNT0229100.2	3	27868078	A	G
Osa03LNT0229100.2	3	27868350	A	G
Osa03LNT0229100.2	3	27868368	A	G
Osa03LNT0229100.2	3	27868765	C	A
Osa03LNT0229100.2	3	27868971	G	A
Osa03LNT0229100.2	3	27869527	C	T
Osa03LNT0229100.2	3	27870487	A	G
Osa03LNT0229100.2	3	27871570	A	C
Osa03LNT0229100.2	3	27871809	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0229100.2	osa-miR5537	Cleavage	5.0	16.618	1	22
Osa03LNT0229100.2	osa-miR5789	Cleavage	4.0	22.71	1	21
Osa03LNT0229100.2	osa-miR6248	Translation	4.5	19.32	1	21
Osa03LNT0229100.2	osa-miR5079b	Translation	3.5	18.235	1	22
Osa03LNT0229100.2	osa-miR5079b	Cleavage	5.0	21.136	1	22
Osa03LNT0229100.2	osa-miR5079b	Cleavage	4.5	12.086	1	22
Osa03LNT0229100.2	osa-miR167a-5p	Translation	5.0	12.737	1	21
Osa03LNT0229100.2	osa-miR167b	Translation	5.0	12.737	1	21
Osa03LNT0229100.2	osa-miR167c-5p	Translation	5.0	12.737	1	21
Osa03LNT0229100.2	osa-miR168a-5p	Translation	4.5	13.362	1	21
Osa03LNT0229100.2	osa-miR1430	Cleavage	5.0	14.985	1	21
Osa03LNT0229100.2	osa-miR169r-3p	Translation	4.0	14.985	1	21
Osa03LNT0229100.2	osa-miR1853-3p	Cleavage	4.0	20.525	1	22
Osa03LNT0229100.2	osa-miR1320-5p	Translation	4.5	14.048	1	21
Osa03LNT0229100.2	osa-miR2099-5p	Cleavage	5.0	18.224	1	22
Osa03LNT0229100.2	osa-miR2878-3p	Translation	4.0	8.467	1	24
Osa03LNT0229100.2	osa-miR5079a	Translation	3.5	18.235	1	22
Osa03LNT0229100.2	osa-miR5079a	Cleavage	5.0	21.136	1	22
Osa03LNT0229100.2	osa-miR5079a	Cleavage	4.5	12.086	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0229100.2	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168
Osa03LNT0229100.2	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168
Osa03LNT0229100.2	3	QFlw3	Morphological trait	Culm/leaf	RZ474	C746
Osa03LNT0229100.2	3	Yd3-13	Morphological trait	Seed	RZ403	CDO337
Osa03LNT0229100.2	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0229100.2	3	qSB-3	Resistance or Tolerance	Bacterial blight resistance	R250	C746
Osa03LNT0229100.2	3	nan	Morphological trait	Panicle/flower	RZ448	RZ403
Osa03LNT0229100.2	3	nan	Morphological trait	Shoot/Seedling	RZ403	RZ630
Osa03LNT0229100.2	3	nan	Morphological trait	Shoot/Seedling	RZ452	RZ448
Osa03LNT0229100.2	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0229100.2	3	nan	Resistance or Tolerance	Blast resistance	RM16	RM168

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus