© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0229600.1
GCAGGCCAAAGTCCAGGATATCTGAAGTTCTGAACCCGAAAAGTTGATGTAGTTTAATCAATACATACTACAAATACAAACACTGAAACACACAATAGCGTAATCACCACAAGTACTACAAATCTGGTTCTGAATCATAGTGCTCACTACTGGCGAAAAGCACGCGAAAATTAAACAAGATGGCCTTCAGGTTGGTCTCTCTCAGCTCCTCTTAGCTGCAGCACATTTTTTAAAGCGAACATACTGCTGGCATCCACTACTTATTAATCACTGCTAAATTGCTACTTCTACAGGGATAAAAACATGAAGAAGGAAGGGAAAAGAAAATGCAAGGAAACCAACAGGGGAAGCAAGAGCCGATGGCTACTTGAGATGGCTGAACCAACTGGATGGCTTGCTGAAGTTGCTGAACCAACTTGAGAATCTGAAGTGCCTGAACCAGATTTTGAGCCAGGCCCTGATGCCTGCAGCATGTTCTTGAACCAGTTGGCTGAGTCCTTGGGGTACCGTTTGAGAGTAGTGAAATCAACATAGACAATGCCGAACTTTGATGTGTAACCTGACAGCCACTCGAAGTTATCGAGAAGAGACCATGCGAAGTACGCAACCACATTTGCACCATCGTCGATGGCTTTCTTCAGTTCAGTGAGGTAGTTCTTGTAGAACTCAATCCTTTCGGTGTCATGCAGGAACTCTTCACGAGTGAGATTTCCAGATTGATCCATTCCATTTTCAGATATGATGATTGTTGGATTATTATACTTCTCCTTTATGTAGTTCACAGCTCCATACATGCCAGTCGGAACGATATAAAGCCAATTAGAGTTTGCCTGCTGTCCAATTGGTACGCCATTTCGTTGAAAGATAAATGAAACATGCCAATCAGATGAGTAGCTAGTTGCTGCTTGCTGAGGTGCTGGTTGGTCTGCCATGTAGTTAGCAGTATATTGATTGATCCCAAAATAATCTGCGGAGCCCTTGACTAGCTTAGCTTGTTCAGGCGTGAAAGTAGGTAATCTTTCTTTCACAATATCTCGCATATTTTTTGGATATTGTCCATTTATTAACGGATCAAGAAACCAACCAACATGGAAGTCTCTGGCTCTTTGAGCTGCTGCTTGGTCTTCAGTTGAGTTAGTTAGAGGTTCATACCAATTAAAATCGAGAACTATTCCGATCTTGCCTTTCTGACTTGCCTGGAACTTGTTACGGTATCTATCAACTGCAGTAGCATGAGATAAGATGATATTATGAGCAACAATATATGGCTCTGTTGCTGAGTTCCCACCGGCAGCACACTTGGTGCATCGGTTAGGTGGGTCTGTCCCTGTATCATGGCCAAGTGCTGCTACTATCCTTGGCTCATTAAACGTAAACCAGTTCTTGACTCGATCGCCATATGTCTTGAAACAAAACTCAGCATAGTCCGAAAATACACCAACAATTTTTGGGCTTAACCAGCCTTCATACTTTTTCTGAAGTGCAAGTGGGAGATCGTAGTGGTTCAGATTGACGTAAGGAATAAGCCCTTGCTTAATTACATAATCTATTAGATTATTGTAATATGCCACACCTTCCGTGTTAACTTTTCCCTCTCCATCAGGGAAAATCCTTGACCACGAGATTGAAAACCGATATGCATCGAAATTCAGGCTTTTCAAGAGATCAACATCTTCCTTGTAGCGATGATATTCATCTGTAGTAACATCTGCATTCCCATTTCCCGCAATATTCCGCAGTCGTCATCTGCCGGCGGAGAGCTCGATGGCTTCCTGGTTGAAGATGGAGTCCTCGCCCCAGTCGAAGCGCTGCTGCATCCGCTCGTAGTCCTGCCGCCGCGTCACCTCCACCTGCTGCCACTCCTCCCACCGCTCCGCGAGTCCTTCCCCTTCCAGCATCCGCACCACCTCCGACATGGACGGCCGGTCCTCCGGCGACGCCTGTGTGCACAGCAGCGCGATCTGTATCATCATCTCCACCTCCTGCCCGTCGTAGTTGCTGCTCAGGTTCCGGTCCACGATGGCGCCCAGCTGCCCTTCCCTCTGCAGCTTCTTCACATGGTCAAGCAGTAGCACATCGTCTTCTTCCTCCAACCGTGAGAAGTCGATGGCGCGTTGTCCAGTGACCAGCTCAAGAAGCATTATGCCATAACCAAAAACATCAGTTCTCTCCGATGACTTCCCTGTGGACAGATATTCAGGCGCAATGTGACCCATAGTTCCACGGACTTGAGTTGTCACTGATGTCTTCTGTACATCAACCAACTTTGCCAGGCCAAAGTCACCAACAACTGGCTCAAAATCCTCATCAAGCAGGACGTTGGCAGCCTTGACATCTCGATGTATGATCTTGGGATTACAGTGCTCGTGCAGGTACTCCAGTCCACGTGCTGTGCCTATTGCCACACGTTTCCTTGCTGACCAATCCAATATTGGTTCGCCAGGTTTGAATTCTCGTAAACGATAGGCCACACTAAGATTCTGCATGAAAGGATAAACAAGTAGACGTTCTGTTTGTGTTGTACAGAAGCCAATCAATCTTAAAAGATTCCGGTGAACTGCAACACTGATAAGCTCTACTTCACGCAAGAATGCAGCCTCCCCACCAGGGCTTTCATAATCTGTCAACCGCTTTACAGCAATCTTAGTGCCATCTGGAAGTGCTCCTTTATACACTTTACCGAAACCCCCCTGTCCAAGGACATTTTTCTCACTGAAACTATCGGTTGCAAGTTGTAATTCTCGCCAGGCAAATCTTTTCAACTGACCAAATGCAATTCTTCGATCGTCCTCGCCTGATACATCGACAAAAACTTCTCGTAGATGGCTTTTCCTCCTTCCATTACAGACAATAAACACAGCCCCTATTATAAGTATCCCTATTGCTCCTACAACTGTTCCGAGTACAATGCCTACCTTTGAGCCATGGGATGAACCTTGATAAGAAATACTTGATGAGCATGGATGCAGAAAGTTTGCTCCACAAGTCAAGTTATTACCAGAAAAGTTGTAACGTGCAACTTGAAACAGCGAACCAGGTATTGAACCAGAGAGTTTATTGTAGGCTAACCTACTGCAATCATAAGAAAAAAAATATGTTAGTCAAATAATTCAGGCATGGACTGTTGTCAACAGAAATCATGTATGAGTCCTTGCATGTCTGTCAAGCTTGAGATTCTTGCTACAGTATCAGGTATAGTTCCGTTGAGATTGTTTTGACTTAGTATCAGAATTTGGAGCTTTGAAAGCTGGCCAAGAGAAGCCGGTATTGGTCCAACCAACAAATTGTCTTCCAAATCCAAACTTGTCAAACTAGATAGGTTGCCGATCTGCTCAGGTATGCCACCAGTAATCTTATTACCAGGCAAGGACAAAACATTCAAAAACTGAAGCTCTCCAATTCGTGGTGATAGAACTCCAGTGAATCCCATAGATGCCAATGTTACTTGCACAACATTGTAGTTGTTGTCACAAATAACAGAATTCCAAGTGCATGGGTTAACTTGATTTTGGTTCCAGTCAGAAAGCTGGTTACCAGTAGCATTCAGCTTCAGCTTCATATCATATAGTGCATCACCTTGACGGTCAGATGCTGAAAATGGGAGCAGAGATGCTATAATTAGGAGGACGCTGAGCAGATCCATGACTCTTCAGTTATAATTACAGCATCAAAAGAGTTCCTTGGGGAAACTTGCCCGGCGAAAAAAAGTACACGAACTGATCATAGTAGTATAATACCGGAGTCCCTGGCTAACCCAGTTAACAAGCAAGCCAGTCCAGTATGGCACCTGATAGAATTAACCAAAACGTTCCCAGAAGCAGCACAACTGTGATCCAGTGATCCCTCCCAGTGAGAGACGGCACCAAAATTAAACCCACAATTCGAATTGAACAAACTCTTTAAACACCAGAGAGAATCAGAGATTCAGCCTCTCCAAATCTGATCCTTCTCTTACTGCTTACCTCCAGCACTTCCAAATTCCAATTCACACACACACAGACAGTGAAGACTGAAGAGAGAAGCACGTACTACCTACCAGTGGCTTGCCCTCGCAGGCTGGGCAGCAAGCAGGTCGTCGCAGGTCCACGCCGCCTCTCCCACTTCACCTCCTCACCCCGCCGCCGCCGCCGCCGCCGCTGGCGCGCGGGTAAAAGGCGTGGGTGGGGCGCTGCGCTGGAGCAGTTGACTCGAGGAAGCAGCAGGAATTGACCGGTGCTGCCGGGGCGGAGCGCGTGCGGCCATTTTTTTTAGGCGCGACGCAACTTGGTTGGTTAGGTGGATCCCCCTCCTTTTTACCTCCCCATCTCTGGATAAGACGGAATTCGGCGACCTTCTCCTCCGGATCGCA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0229600.1 | 3 | 28253049 | C | T |
| Osa03LNT0229600.1 | 3 | 28248851 | G | A |
| Osa03LNT0229600.1 | 3 | 28249094 | G | C |
| Osa03LNT0229600.1 | 3 | 28250728 | G | A |
| Osa03LNT0229600.1 | 3 | 28250884 | G | C |
| Osa03LNT0229600.1 | 3 | 28251016 | T | C |
| Osa03LNT0229600.1 | 3 | 28251160 | A | G |
| Osa03LNT0229600.1 | 3 | 28251750 | A | T |
| Osa03LNT0229600.1 | 3 | 28252107 | A | T |
| Osa03LNT0229600.1 | 3 | 28252756 | T | G |
| Osa03LNT0229600.1 | 3 | 28252876 | C | T |
| Osa03LNT0229600.1 | 3 | 28252897 | T | C |
| Osa03LNT0229600.1 | 3 | 28253439 | G | T |
| Osa03LNT0229600.1 | 3 | 28254355 | T | C |
| Osa03LNT0229600.1 | 3 | 28252248 | A | G |
| Osa03LNT0229600.1 | 3 | 28255270 | A | G |
| Osa03LNT0229600.1 | 3 | 28255767 | A | G |
| Osa03LNT0229600.1 | 3 | 28255794 | A | G |
| Osa03LNT0229600.1 | 3 | 28256377 | T | C |
| Osa03LNT0229600.1 | 3 | 28256795 | G | C |
| Osa03LNT0229600.1 | 3 | 28258007 | T | C |
| Osa03LNT0229600.1 | 3 | 28258698 | T | C |
| Osa03LNT0229600.1 | 3 | 28258761 | C | T |
| Osa03LNT0229600.1 | 3 | 28258539 | G | A |
| Osa03LNT0229600.1 | 3 | 28253280 | G | A |
| Osa03LNT0229600.1 | 3 | 28255045 | A | G |
| Osa03LNT0229600.1 | 3 | 28256430 | C | A |
| Osa03LNT0229600.1 | 3 | 28258189 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0229600.1 | osa-miR5790 | Translation | 4.5 | 11.307 | 1 | 24 |
| Osa03LNT0229600.1 | osa-miR5816 | Translation | 4.0 | 11.802 | 1 | 24 |
| Osa03LNT0229600.1 | osa-miR160a-3p | Cleavage | 4.5 | 20.751 | 1 | 21 |
| Osa03LNT0229600.1 | osa-miR160b-3p | Cleavage | 4.5 | 20.751 | 1 | 21 |
| Osa03LNT0229600.1 | osa-miR160d-3p | Cleavage | 5.0 | 20.751 | 1 | 21 |
| Osa03LNT0229600.1 | osa-miR395c | Translation | 3.5 | 13.145 | 1 | 21 |
| Osa03LNT0229600.1 | osa-miR166k-5p | Translation | 4.5 | 13.659 | 1 | 21 |
| Osa03LNT0229600.1 | osa-miR1861c | Cleavage | 5.0 | 19.316 | 1 | 22 |
| Osa03LNT0229600.1 | osa-miR1863a | Cleavage | 5.0 | 16.406 | 1 | 24 |
| Osa03LNT0229600.1 | osa-miR2926 | Cleavage | 2.5 | 20.981 | 1 | 20 |
| Osa03LNT0229600.1 | osa-miR2928 | Translation | 4.5 | 18.206 | 1 | 20 |
| Osa03LNT0229600.1 | osa-miR395x | Translation | 3.5 | 13.145 | 1 | 21 |
| Osa03LNT0229600.1 | osa-miR812o-5p | Translation | 4.5 | 20.35 | 1 | 21 |
| Osa03LNT0229600.1 | osa-miR5149 | Cleavage | 4.5 | 24.755 | 1 | 22 |
| Osa03LNT0229600.1 | osa-miR5814 | Translation | 5.0 | 15.351 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0229600.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ403 | RZ630 |
| Osa03LNT0229600.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ452 | RZ448 |
| Osa03LNT0229600.1 | 3 | nan | Morphological trait | Panicle/flower | RZ448 | RZ403 |
| Osa03LNT0229600.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | C746 | RZ448 |
| Osa03LNT0229600.1 | 3 | Qpn3 | Morphological trait | Culm/leaf | CDO337 | OSR31 |
| Osa03LNT0229600.1 | 3 | nan | Resistance or Tolerance | Blast resistance | RM16 | RM168 |
| Osa03LNT0229600.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | C136 | R1618 |
| Osa03LNT0229600.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0229600.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0229600.1 | 3 | Yd3-13 | Morphological trait | Seed | RZ403 | CDO337 |
| Osa03LNT0229600.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | C136 | R1618 |
| Osa03LNT0229600.1 | 3 | qRFWd3-2 | Resistance or Tolerance | Other soil stress tolerance | C944 | C746 |
| Osa03LNT0229600.1 | 3 | qRFWw3 | Resistance or Tolerance | Other soil stress tolerance | C944 | C746 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)