© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0230400.1
CTGTAAGACGCGATCCAATAGAATTACTAGCTCGGCTGTCTTACAAAAGGAACAAAAAAATGAATAGGCACTGTTTAACTTACACTGATACACCCTCTGTTAGTCGCTTGAAATCACCGTTCTTACCATACAATGAACCGCTCAACAACATAATTCTACATAAAAGAATTAGTGGCTACATACAATTGATGTACACGACCCCCCATTTACAAAAGGAGAAATAGACTATTTCTCAATACCCTGCTGCAAGTATTGAATCAAGTCGTACCCTGCGGTAGTCCATTTGTTGTAGGCATCCACACATGTTCTGACCATAAAATTAGCAGCCTCACGCTCGTTCATCTCTGGATGAAAACGTTTTCGCAGATTAGCGATAGGTTCTCCCCTGCTAAAGCAAGGCAGGCCACTGTCCACCATCAAATTAACGGTAGTAATAATCCCATTCATGTGTCTCCTTCCTGCTAGGTACCCTTTGACACACAATCTCAGAAACTGATTCCAAGTGTCACTCTTCATTGTTCCAGATGGATCAAGCAATTGAGTCATCTCATGGCTTAACTTGAAATGTGCACTTTCAAACCCCATGTTTCCTCCAGGCGAAATCTCCAAAATAAATCCAAAATCAATATGGACTAGTCTCCCGTGGCTATCAAAGAGAAGATTGCCATTATGCCGATCCTTTGGCTGAAGAAGCAAGCTAGCAACAGCATATCCAGCACTACTGATCATGAACATTTCGCGAGCAGCTTCGAAAGAAGGTGAACCTACAGGGCCATAGTCTTGCTGAAATATCTCTAATAAACCACCATCAGTTGTTTCACCCATTTGATTTCTACTCCGAGTATTTGGTACCACCTCAATTATGCCTCGCTCTGGTCCAGTGGGTAAAACACCATATGGGAAGAGATAAAGGTTTAATCCAACAGCTTGAAATATGTCCCTTAGAAGAGCAATAACTTGGAGTGCCAGCACATCCTGTCTACAATCATCACCAACCTTAAAAATGCAAGCCTGTGGCTTCACATCGTTTGGGTCCCCATCACGATCAACCACATTGAAAGTAATCATTATTGGAACTTTAGCAGCAGACTGGAGAGGAATGCCACTGTCTACTTGAATGCCCCGTACAAACTTGTTTGTTGCAGTAGGTAGGTACAGATCATCACCTGGCACAGTAATCTTCTCCAGCTCCCTTTTAATACCCGCTCGCCGCTCTTCTTTGGGAAGAGGAAAAAGAACACCAGAAATCGAGGTGACCTTGTCAAAAAATTCGAACTCTCTTTCAAACATGTCACGAGCTTCTGGAGTAAAACCGTCAACAATTTTCTCCCTAACGGCAGGAAGCAAGGAATGGAATGCAGTGGCCTTTGGTGCAGCTGCTTCCTTCCCAGGTTCATCGGGAACACATTCTCCCTGCAGATGCCATATTAAAATATGAGCAAATATATTACTTCTCCGAGCAGCTCCAAGCAAGTATCCTTCAACCAATTTATCATCATCATATCTGAGAGACTGTACCAACTGTGGCATAAAGAAGGTAACAGTCTCAGGTGGGTAAGTCTCCAGGACACGAAGAACATATGCCATAACACGGGGATGTCCTTTATAAGGAGGGGTAAGAAACTCCAATGCTTGTGTAACAGAGCATGGAGCCCAATGTGGAAGTTGCTGTAACAATGATGAATTTTCATCTACTGCCTTTGGAGTGATGAAAAAGGGTAATGCTTCAGGAATTGTACGGAGTTCCAATATATGTGTCTGTACCAATTGTGTAATTTCTGATGATAATGCCGAGTTTGTGGGAAACCTCATAATCATTGAGAATGCAATTCGAGGATCAACAGCAAAAGCAGTTCTGGCATGATCAATCCATTTATCTGAGCTAATTTTACCACGAAATGTTGCTGCATCTTTTGTATTTATCGGTTGTGCCCACACTTCAAGTCTGTCTGCCTCATTCTGAGAAAGCATAAGAAGTAATTGTTTACGCTTTTCCCGTACAGTTGTATAGTTATCCACTGAGCCCCAGACAGGGTGGTTCTGATCCAGCATATTGGGTTCACCTTCACGTCCCTGTGACTTCGGAGCAGAATCAGCAGAACCACTGGGGCGCTCATTTTGTAGACAATGGACAAATATTGACACGGATTGGGCCTCTCTCTGAGCAAAACTTTTGTTTTGAGATTCATACCACTCAGGTGCATAAGCAAACCATCCCAAAGCAGCACGGTATACCCTGTCCTCTAATAACTGAAGTCCCATATTACATTTCTGCAAGTTAGACTGAGACTGGCATGAGCAAAATTTCAGCCCCAGGAGCATTGCAGTGAAGAAAGTGCCAGTTGCAGCAGGATGGTGAGAAAAATGAGTAGCAGATTTCATTGTCCCTTGCAACATCCGACCCAGAAGTAGAAGCTGCTCAATGCTATCATGCCGAACCACCTCAAACCGATCGATGAAGAAGCCAAGCCAGAGCCTATGGGCTATTATTGCTTCAACTGGATCCTTTTCTGGTGGTGCCTCAGGCTCACCAGAAATGAGATGTGGCCTCAATTTTGCATCAGGGCCACAGTAATTCATATCTGACGCAAACAGACCACATTTTGTATCTATTGTCCACAGCCATGCATCAACAAGTTCTGCAAGCACAAGAGGACCTAAGGAAGGTGCTGCAGATACTAGCCAGGTCCAGATAAATATCCCAGTCTCCATTGCATCAGGAGTGCATATATAAGCAGGACACCAGCATAGAAGACGTATAAGCTGAGAAAATCCATCTAGATTTGCTCTAGAGTCAGACACCATATGATCAAGAAGTAATGCTGTAGACTGAGAACAAGTTTCACGGAACACTGTATTATCTATTTGATTTTTCTCTGCCGTAACAACGAAGTCCTGAAGAAGACGAACAAATCTTGACAGAAAAACTTCGTCAAATGATTGATTGGGCTGTGCAGACTGCATACCAAGGGGGGACATGCCCGTGTTCATGCCTCCCATAGAACTGAACAACCTTCTCATACCAGCAATCTCCCCTGCATGGTTGCATTTAACAGTTGCAGTCACTACTGCAGTTGACAGCACTTCCAGGGTGATGTCAGGTGCTTCTTTTTTGGCCCCTGATGCTGCTGCAGCAGAATCCATAACTGCAGGTACATTGGCTGTCCTGATGCCATTCCAATCATTCTTTCCACTACAAATACGTATTTCAGATAGAAGTGATACAACATCTGCTGTATGTTGTGATCTTTGTGCTCCACTTGGCTTGCAAAAATTTTCCTGTATAAGGCCTTGAGTTGTACATGGAGCATATGAAAGAGCACTCGTTATCCATTCCCTGGCAATCTTCTGATATAGTGAGCGTACAGTGGCAACCCAAGCAGGATCGCTAACTGGACCAGAAGTCAACTCATTATGAACAGATATTAGAAGTAAATCTACACATGATGAGTTCCAGAGGACCTGTGGAAACTTTTCCTTTAGCTGAGTTAACAGCTTGACACTCACATCACGAACATTTTCATCCCTCTGTGACATGCTCTTTATAAGGAAGCAAGCATGAACAGAAATAACAGATTCCCTTATATCAGCTCCTTCTCCTATGTCACATATACGATCCTCCATCCATGACAACACTGTTTCAAAAGCTCTATGCACAACTGCAGTCAAACACTGAGATACTGCTGGTGTCAAGTTCGGGGTTAGCAGGTATTCGAACACA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0230400.1 | 3 | 28691779 | A | G |
| Osa03LNT0230400.1 | 3 | 28692393 | T | G |
| Osa03LNT0230400.1 | 3 | 28692428 | A | G |
| Osa03LNT0230400.1 | 3 | 28694924 | G | C |
| Osa03LNT0230400.1 | 3 | 28696335 | C | T |
| Osa03LNT0230400.1 | 3 | 28696634 | A | T |
| Osa03LNT0230400.1 | 3 | 28696839 | G | C |
| Osa03LNT0230400.1 | 3 | 28697932 | T | C |
| Osa03LNT0230400.1 | 3 | 28698205 | T | C |
| Osa03LNT0230400.1 | 3 | 28698640 | C | T |
| Osa03LNT0230400.1 | 3 | 28699346 | G | A |
| Osa03LNT0230400.1 | 3 | 28699677 | G | A |
| Osa03LNT0230400.1 | 3 | 28693027 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0230400.1 | osa-miR812r | Translation | 4.5 | 17.995 | 1 | 24 |
| Osa03LNT0230400.1 | osa-miR6246 | Cleavage | 5.0 | 9.363 | 1 | 23 |
| Osa03LNT0230400.1 | osa-miR5512b | Cleavage | 4.5 | 15.169 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR167c-3p | Cleavage | 5.0 | 20.137 | 1 | 23 |
| Osa03LNT0230400.1 | osa-miR396a-5p | Translation | 4.5 | 24.835 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR396b-5p | Translation | 4.5 | 24.835 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR396c-5p | Translation | 4.5 | 24.835 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR399a | Cleavage | 5.0 | 24.886 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR399b | Cleavage | 5.0 | 24.886 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR399c | Cleavage | 5.0 | 24.886 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR399i | Cleavage | 5.0 | 14.641 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR171i-3p | Cleavage | 5.0 | 15.001 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR396e-5p | Translation | 3.0 | 22.855 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR1866-3p | Translation | 5.0 | 19.674 | 1 | 22 |
| Osa03LNT0230400.1 | osa-miR1870-3p | Translation | 4.5 | 11.489 | 1 | 24 |
| Osa03LNT0230400.1 | osa-miR2094-5p | Translation | 4.0 | 19.459 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR396f-5p | Translation | 4.5 | 24.757 | 1 | 22 |
| Osa03LNT0230400.1 | osa-miR2122 | Translation | 4.5 | 17.462 | 1 | 22 |
| Osa03LNT0230400.1 | osa-miR396g | Translation | 3.0 | 22.855 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR396h | Translation | 3.0 | 22.855 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR396d | Translation | 3.0 | 22.855 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR5512a | Cleavage | 4.5 | 15.169 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR5524 | Cleavage | 5.0 | 23.688 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR5544 | Cleavage | 4.5 | 14.703 | 1 | 22 |
| Osa03LNT0230400.1 | osa-miR171f-5p | Cleavage | 5.0 | 23.991 | 1 | 21 |
| Osa03LNT0230400.1 | osa-miR5161 | Cleavage | 5.0 | 17.45 | 1 | 20 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0230400.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0230400.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0230400.1 | 3 | Yd3-13 | Morphological trait | Seed | RZ403 | CDO337 |
| Osa03LNT0230400.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | C136 | R1618 |
| Osa03LNT0230400.1 | 3 | qRFWw3 | Resistance or Tolerance | Other soil stress tolerance | C944 | C746 |
| Osa03LNT0230400.1 | 3 | qRFWd3-2 | Resistance or Tolerance | Other soil stress tolerance | C944 | C746 |
| Osa03LNT0230400.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ403 | RZ630 |
| Osa03LNT0230400.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ452 | RZ448 |
| Osa03LNT0230400.1 | 3 | nan | Morphological trait | Panicle/flower | RZ448 | RZ403 |
| Osa03LNT0230400.1 | 3 | Qpn3 | Morphological trait | Culm/leaf | CDO337 | OSR31 |
| Osa03LNT0230400.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | C746 | RZ448 |
| Osa03LNT0230400.1 | 3 | nan | Resistance or Tolerance | Blast resistance | RM16 | RM168 |
| Osa03LNT0230400.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | C136 | R1618 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)