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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0230800.1

ATATGAATGCAGATATATATATTCTTTGTTGATTTAGCACCTCCACTGATATATCATGAGAGATTTTAGATGCCTTGTTGCCAACTGAAAGGATCCGCATTCTTGGTAGAGCTACATTTTTTGCTAATGGAGGCGGCTCTTGAAGTCGTCCCATGGAAGATCCTTCTCCAGGTACTCGATGTTGGTGGGATTGAACGGGCCCCTCACCACGTCCACCGTCTGTATGATCGCCCTCTCCGGCAGCACGCTCATCGCTGGATCCGCCGCCGTTCTCCCGCTCAGCCTCGACGAGAATCCCTCTTCCACACCGGGAGGCGGCTGGACCTCGTCGACTCCAGGTCGCCTCCACGCGCCTCTGGCCGGTCGCCTCCATGCGCCTCTGGCCACGGCGGCACGGCAGGCCCCGGCCCCAACCTCACGCGGCGGCCGCCCGACCGCCTCCACACTCGTGGTGAGCTCGTCGGAATGTCACCTCTCCGGTCACGGTGGCGGCGACTCTCCCCGCTGGCTCGCGGACGCGCGCGATGAGGAATTGGGGGCGCCGTCTCCCGCCA

Coding Potentia
Explanation CPC Score
noncoding -1.12034
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0230800.1 3 28852757 C T
Osa03LNT0230800.1 3 28853921 T C
Osa03LNT0230800.1 3 28854178 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0230800.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0230800.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0230800.1 3 Yd3-13 Morphological trait Seed RZ403 CDO337
Osa03LNT0230800.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0230800.1 3 nan Morphological trait Panicle/flower RZ448 RZ403
Osa03LNT0230800.1 3 qRFWd3-2 Resistance or Tolerance Other soil stress tolerance C944 C746
Osa03LNT0230800.1 3 qRFWw3 Resistance or Tolerance Other soil stress tolerance C944 C746
Osa03LNT0230800.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
Osa03LNT0230800.1 3 nan Morphological trait Shoot/Seedling RZ452 RZ448
Osa03LNT0230800.1 3 nan Resistance or Tolerance Blast resistance RM16 RM168
Osa03LNT0230800.1 3 nan Resistance or Tolerance Drought tolerance C746 RZ448
Osa03LNT0230800.1 3 Qpn3 Morphological trait Culm/leaf CDO337 OSR31
Osa03LNT0230800.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus