>Osa03LNT0230900.1

CCGACACAATGGCGATTTAACCCTGGATTGTGCAAACAGTATACCAGATGGTCAAACAGGGTACAGGGATATAGTGCAATATACCATGTAGTAGAAAAGAAACATTTGAGCAATGGAGTACCCATGGTGCTACAAGTATCGAGTGCTACAACTACCCAGAGGTCAACGAAGTTCAATAGAACAAATGGCCAACCACTTCAGCAGCAGCCCATAGGGGCCAAAATGTTAGGATCGCATCAGGGATTCTAAATCAGGCCCTGGCGCTGCAGATCAGTGTAGGTCTTCTTGTTGTAGATATTTCCCTCCTGATCTTCGTACTCTTCTTCTAGGTCTGGCCGCCACTTGTTCAGCCCTTGTCGTTGTTGAATTTTCTCCCAGAGTTCTTTTGCCTCCTGGATGGATGTGATTTCATTGAAGTTCTTAGTATTAGGAATTCCAAGACAGCGCATCCCGTGCTGATGGCGCCACTCCTTGAAATGCCGCTCATAAGCCCGTCGCCCCCAGTAGCTGTGGTTTCCACATATCTCACATTTGAATTCCTGACCAAGACCATGGAGCTTATATAGCCAATAGGGTATAGGTTTGCCGTCCCAACCCATCGGCAACTTAAGAGGATTGTAGATTTGTTGGTCTTCATCATCACTTTCACTATCAGCTTGCACTTCTTCCTCTTCTCGTTCTGCTTCCATTTCTTCATATGTGAGAGTCAGCTTCTTCTCTGCATTTTCCTTTGTCCGTACAATGATCTCATCTAGTAGCTCACAAAGGCGCCTCATCTTTACTTCCATTAAAGCAATTTCCTTCTTCAAATTATCCTTGAAATTGTTACCATTAGAAGTAGCATTGGAGACAGAACTGTGTGAACCTTTGGCAAAATGCTTACGATCCAATTGTTCCAAGGGTGTATGCTTCAACAAGAAAAGTCGCTCAGCACGCTGTTGAACAGTACCACCACTTTTTAATCCACGAGCAGCTAAAGCCTCTTTCAACTTTTCTGGGCCCAGCTCAACAAGCTCTTCAACAGTGGTATAGTAATCAAGGTCTATTACTGACTCTTGTGCAGATTCTTTCTCTGGGTCCTTGCTCTCCCATCCAGGCACTTCACCATTGATCCACTGTTCTTCAAACTCGCTTTCCAACTTTGCAAAAATCTTCTCAATGTCTTGCAATGGTTCTGTGTGATACAGAAATGATGTCAGATACTCCAAAATATGCTCCAGGTATTCTCTGTATTGCCTGGAGGTTTTCAGATTTTGTGCCATCTTCTCCACATGAGAAAAGGTGCCAACATATGCTGAGTATTCCATTGGAGTTCCAAACTTGGAATTTATGAACTCATTGTAAAGCTCATGCAAGTCCAGGTATCGGCCAAAAGCTTCCATGTATACCACCGAGATCCTACAAGAGGAATCAAACAATCCTCTCCAGTGAATTCAATAGCCGGTTCCTCCTTTAGTAGCTCTTCGAAATCATCAGTTGCACTAACGAAACGGGCAGAAGGATTACGCCTATGGTAATCACGGATCTCTTTGAGCCTGTCATAGAACTTTGGAAAGATTTCAGCTTGCACTGTGGAACTAAGATGGTTGGAGATCTCATCCTTCCTAGCATTATCCTTGTCCTCGTAGATTTCCACGAGCTTGCCGGAGGTGGAGATGACGAGGTCGAGCATGTGGCGCACGCGGTGGGACTGGTAGAGGCGGTCGCGCGCGTTGGCGGGCTCCCGCTGCAGCTCCCGCACCGCCAGCCGCTCCAGCCTCTCCATGTCCTCGTGCTTCGCCCGCGTCGCCTCCAGCACCGTCGACGCCATCGCCCTCCGGTGCTGCCTCGACGCCGCGGCGGCGGAGGTGGGGAGGGGAGCGCGCGCCGCCGCCGCTAGGGTTTTGGGGGAATTTTTTCGCGGTCGGTGACGGTAAGTGTAGGAGGCTA

Explanation	CPC Score
noncoding	-1.09805

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0230900.1	3	29040670	G	A
Osa03LNT0230900.1	3	29040778	G	C
Osa03LNT0230900.1	3	29041802	A	G
Osa03LNT0230900.1	3	29043568	T	C
Osa03LNT0230900.1	3	29044190	T	C
Osa03LNT0230900.1	3	29044300	G	A
Osa03LNT0230900.1	3	29045210	C	T
Osa03LNT0230900.1	3	29041459	T	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0230900.1	osa-miR1858a	Translation	4.0	5.782	1	21
Osa03LNT0230900.1	osa-miR1858b	Translation	4.0	5.782	1	21
Osa03LNT0230900.1	osa-miR1861h	Translation	5.0	12.757	1	22
Osa03LNT0230900.1	osa-miR1861j	Translation	5.0	12.757	1	22
Osa03LNT0230900.1	osa-miR1866-3p	Translation	5.0	16.027	1	22
Osa03LNT0230900.1	osa-miR2100-5p	Cleavage	5.0	22.228	1	22
Osa03LNT0230900.1	osa-miR5076	Cleavage	2.5	10.514	1	22
Osa03LNT0230900.1	osa-miR5339	Cleavage	4.0	17.562	1	21
Osa03LNT0230900.1	osa-miR5523	Translation	4.0	13.534	1	22
Osa03LNT0230900.1	osa-miR5523	Cleavage	4.5	18.394	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0230900.1	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0230900.1	3	nan	Morphological trait	Shoot/Seedling	RZ403	RZ630
Osa03LNT0230900.1	3	qRFWw3	Resistance or Tolerance	Other soil stress tolerance	C944	C746
Osa03LNT0230900.1	3	qRFWd3-2	Resistance or Tolerance	Other soil stress tolerance	C944	C746
Osa03LNT0230900.1	3	nan	Morphological trait	Shoot/Seedling	RZ452	RZ448
Osa03LNT0230900.1	3	nan	Morphological trait	Panicle/flower	RZ448	RZ403
Osa03LNT0230900.1	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0230900.1	3	nan	Resistance or Tolerance	Drought tolerance	C746	RZ448

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus