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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0231000.1

ACAAATAAATTTCAACTTGAATAAAAATGTGAGCCTGAGATACAAACTGAACAACTGATAATATAGGACGTAGAAGTTTGCATGTCCGACAGAAAACCAAGACGTATACAGAGTTGATCGTACAGCTTTGCAGTGTAATTTTCATTGAAGATGTTTTTTAGGACTATTTAATATGATTTACATCCTGTGATAGCCGTATCAATCAATACATGTACCAGAACCTCGACTCAAATGGATCACGGTAAGCAATTCAAGGCCTCGTAGCCTTCAATAATCTTGATGAAATTCTTGACCATGAGCCTCCCTTCTGTTGTTATGATGCTCTCTGGATGGAACTGCACACCCTGTATATGTTTGTACTTCCTGTGGCGAGCAGCCATGATCAGCCCATCGTCTGTCCAAGCAGTAATTTCCAGGGCATCATGTGGGAAGCTATCCTTCTCAATTACAAGGCTGTGGTATCTTCCCGCTTGGAATGGGTTTGGGAGACCAGAAAACAGTGTTCCATCAAGTTTCTCCTCATAGTGAACAAGGGATCCTTTCCCATGCACAACTCCATAAGGAGAACGAACAACCTTCCCTCCAAATGCCTCCCCAATACACTGCAAACCCATGCAAACCCCAAACAAAGGTGTAGAAGGTCCAAGATCTTGAACTGTTTGCAATGATATTCCTGAATCTTGAGGTGTGCCAGGGCCAGGGGAGATGAGTATTCCTCTAGGAGAAATCCTGTGGAACAAGCAAAATGTTCTTAATTTCTTCCACGGTGATATCATCATTGCGGTACACCTCAAAGTTAGCTCCCACCTCACCCATGTACTGGCATAAATTATACGTGAAGCTATCGTAGTTATCTATAACTATGATTGGTCTAGTATCTTGCTTTACTCCATCAAATGCGTTTTCACCTTCCACCACAGAAACAGCACTCTTAGCAACAAGCTTTTGCTTCAGAGTTCTTGCGGGTCCACTAGTAACTCCTAATCGGAGACTGGAGGGGCGGCGCCTCCGCGCCTCCGCGACGGCCGGGGAGGCGGGGGACTGGATCTTGGGGAGGAGCCGCGCGGCGGTGGCCATCGGAGGAGAAGAGTGGCGGAGTTGCTCAGAAATTTGATCAAGTTTTTGGCTTCTTTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.830769
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0231000.1 3 29068699 T C
Osa03LNT0231000.1 3 29069647 A G
Osa03LNT0231000.1 3 29070431 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0231000.1 osa-miR5494 Cleavage 4.5 20.295 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0231000.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0231000.1 3 qRFWw3 Resistance or Tolerance Other soil stress tolerance C944 C746
Osa03LNT0231000.1 3 nan Morphological trait Panicle/flower RZ448 RZ403
Osa03LNT0231000.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
Osa03LNT0231000.1 3 nan Morphological trait Shoot/Seedling RZ452 RZ448
Osa03LNT0231000.1 3 qRFWd3-2 Resistance or Tolerance Other soil stress tolerance C944 C746
Osa03LNT0231000.1 3 nan Resistance or Tolerance Drought tolerance C746 RZ448
Osa03LNT0231000.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus