\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0231900.1

GATTAACTGACTCGGTCACCAGGACAATTTGATTCTCATCTCTCTAGAAGCGGACGGCGAAGACCTCATGCCGCTCCATCGATGATGTCTCGAGACTCGACTATATGCTAAATCATCATTTTGAGTGGTTAGAATCAGCTGAAATCTGCCTCTGAAGACTGTTTTAGCGGTCGGTGATCTTCACGGCAACAGGGTCGCTGCAGTAGGGGCAGTTCCCAAACAGAACGTCGAACGACTGCCTTGTTGTAGTAATCGCGCGTAACCAGTCTCTCAGGCAGACAGAATGGAAAGCTCTGCTGCAGCTCGGGTTTTCACATGTGTAATCTGTCGTGCCCCCGCTGTGAGTCCCAAGTTCATCATCAATTGGCAGATGCTTGGCATAACATATTCCACAATCAACTTGCTCGTCATCTTCGATGTTGACTGAAGGTGGTGGAGGCAAAGCGAAATCCAAGACAGTTGACAGGTTTTCATGGAATTTCTTGTCTGCACTCCACTTTTTGCAATATTTTCTCCAATTAGTTATCAGTCTGTCCAGTTTCCCATCTGTTCCCAGGAAGCGAACCTCTGGTAATGATCTGGGCTTTCGCACATTAACATGTAGTAAAAGATAGCAATCATCACCTAAAGCTATACGGCGATGAGACATAGCAAAGGTTGGCTTTGTTGGATCAACAACCCAAAGGACCTTATCAATGTCATCCATTATAGACCAGTAATCTTGCAATATCTTCAGGTGCTCTTGGAACTGGCAGACAACATCTTTTAGTCTTGAGCCTTTTGACCACTGTAATTCTGGTAGATAAGGAACATCTGCCACAAGGCAAGGAGGACTTGAAGGGTAGTTCATGGGCAGCGTGATCTCCAGTAAATGGTTTCGTCCCTGATCATCCAGGATGCGGAAGACCAGGCACGACACGCCGCCGTCGCCCTTGCCGCTCACCAGCCGCTCCCACCCGACCTCTTCGATCTGCGCGAACACCGCGCTGTAGAACGCGGCCGGCCGCCGCGACGCGTCGCCCGCCCATTCCGGCTCTCCTTCCGCCGCCGCGCGCACGGAGTCGCGCGAGGACGTCGCGTGCAGCGCCATGGCTGTGGCTCGAGAGCGCCAAGGGATCCCCACCGGCGGGGGAGGCGACAAAGCAACCACGCGGCGACTCCCCCCCTCCCCCCCACTTCTTCGATCGCTTCCGTTTACCGGAGACTCACCGTTCGCCAGAAGCAGAGGTGTCGAGAGGAATTCTTGGGCGGCGACCTCGCCGGCGGCTCGCCGGAGCTCGACCAGCGCCG

Coding Potentia
Explanation CPC Score
noncoding -1.16826
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0231900.1 3 29593889 A T
Osa03LNT0231900.1 3 29593915 G A
Osa03LNT0231900.1 3 29594716 A G
Osa03LNT0231900.1 3 29595007 C A
Osa03LNT0231900.1 3 29595416 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0231900.1 osa-miR396e-3p Translation 4.5 20.534 1 24
Osa03LNT0231900.1 osa-miR812n-5p Translation 4.5 17.205 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0231900.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
Osa03LNT0231900.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0231900.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus