\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0232400.1

CCCATGATGAACATGATCAAACATATTCAAACTTATATTCAGGCTAATTCACACTATCTTCAGTCTTCACACATAACCGCAGATTCCCATTCATTGGTAGCTGCAAGTTCTCATTCCAAATAGTGCGCAAATCATGAACTTTCGACAGATTCAATTCCTTGAAAATTTGTACCAAAAGTCCATCCTACTCGTTTGCATGCTTAAGCCCATCAATACTTGGTCCCAATCTTGGAGCTCATGAACAATACAAGGTTTCCCAATTTCCACAATCTAAAATACAGTAGCGATTTACAGTGGAATCAGCTATTTTGAGCTCCAACTGTACAAAATCTTCAGATGCCACATGAAAACCATACACTATGGGGAGCCAAGATATGGAAACAGGCAACGGCAACGAATGGTTAGGGGGCCTCCATCTATACAAAAATTGATACTGCGAGCGCTTTATGATTCACCAAGCAACCGTGCAAGCTATACCAGCTGCTCATTTTTCAATCTTCATGGAACCAGAATTGTTGGTGCTGCCCTCTGCCATTGCGCCACCAGGGTTGTAGTTCAAGTGAGGAATGTTCTGAAGTCCTTCCCACATGGCAGGTATCTGGTTAACTGTGGAGATGTCCTGAATTGTTGTCCCCTGCAAAACATCTGCAGGATTGGAAACATTACACAGCATTTCTGGCTGCATGATTCCTTGGTTAAAATGAGCAACGAGGGCACTTGATCCTGGGTCGACTCCGTAGAAAGCAAGATGTCTATCTTGTGAAAGCATCATTTGTTTCGATAGAATCTGCTCAATATCAAAGCTAAGCTCAGGGTTGACAGTTGCGAGTTTCATCGACAAAAACTCAACTTGACGTTGTAGTGACTGTACATAATTGATTATCTCATCAAGCATGACTGCCTTACCAGTGATCTTACTGCAGCCTGGGACAAGATCTTGAAGCAGCTTCATCCTCTCGCTTATCTTTTTTCTCCTCAGTCTTTCTGCAAGGCTGTGGCTATTAGTGGCTTGGCCTCGCTTTGCCCGGACATGAACATAATCTTCTTTAGTACCATCACCATCAGAAGAATCTTCCTTGCTTTGCATTTTGGAGCAACTCTTTTGGTTGTCCTCCTCCATTGATATCCTCTCTTGCTGAGATGAAACCTCTGTCTGTTGATCACCAACATTTTGTATCCTGCTACTTGCTGATGGGTTCAACAAGGCAATGTGATCATCTATTCCTTTCCTTCTCTTTGCACCACTGCTATGATCATCACTCAGTTGGATATTTTGACAGAATGTGCCGTTGGGTGATCTATAGAGTCCCTCTCTATCCTCTAACACCATGGGGTAAGCTTGAAATCCAAATGCGCCACTGTTATACCCCATCTTCTGATGCAGTGCAACAGAATCCCAGTTCACCTCCAAGAATTCTTTGCCACTATTTGGACCAGGACACTGATCAGATTGCTGGCCTGAATACATCTCCAACTGTTCAGGAAACACCTATCTTTCCCTGTTCCCTGACCGCGAGATCACATGAACCCCTGCAAGAGCCCACCACCAATTTCACCTAGTGCTAGTGCGCATTTGGACACAGCTCAGTTGTCTTCTTGGCCGCAATTTGACCGCAGGGGAGAATGAATGGTGCGGTGAAAGATTATATGGACAAGAAGAGGGAGCAAAAGGGCAAGAAGAGAGCTGCAGGCTAATGTGGTGTTTGTTACCTGCCACTGAGGTGAAATGATTCCTTCTTGCCCTCTGGCAAAGGGTTGTTAACCACTGCAACTGCCCCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.785691
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0232400.1 3 29775136 C T
Osa03LNT0232400.1 3 29774720 G C
Osa03LNT0232400.1 3 29776443 C G
Osa03LNT0232400.1 3 29776575 G A
Osa03LNT0232400.1 3 29777520 G C
Osa03LNT0232400.1 3 29778311 G C
Osa03LNT0232400.1 3 29777772 G C
Osa03LNT0232400.1 3 29778017 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0232400.1 osa-miR6252 Translation 5.0 15.891 1 23
Osa03LNT0232400.1 osa-miR6253 Cleavage 4.5 13.026 1 22
Osa03LNT0232400.1 osa-miR6255 Cleavage 5.0 13.024 1 22
Osa03LNT0232400.1 osa-miR171i-3p Translation 5.0 16.141 1 21
Osa03LNT0232400.1 osa-miR1861e Cleavage 5.0 18.397 1 22
Osa03LNT0232400.1 osa-miR1861g Cleavage 4.5 18.397 1 22
Osa03LNT0232400.1 osa-miR1861k Cleavage 5.0 18.397 1 22
Osa03LNT0232400.1 osa-miR1861m Cleavage 5.0 18.397 1 22
Osa03LNT0232400.1 osa-miR5146 Translation 5.0 17.631 1 24
Osa03LNT0232400.1 osa-miR5150-5p Translation 5.0 21.529 1 24
Osa03LNT0232400.1 osa-miR5157a-3p Cleavage 4.0 13.521 1 24
Osa03LNT0232400.1 osa-miR5157b-3p Cleavage 4.0 13.521 1 24
Osa03LNT0232400.1 osa-miR5073 Cleavage 3.5 16.257 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0232400.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0232400.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
Osa03LNT0232400.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus