>Osa03LNT0232400.2

CCCATGATGAACATGATCAAACATATTCAAACTTATATTCAGGCTAATTCACACTATCTTCAGTCTTCACACATAACCGCAGATTCCCATTCATTGGTAGCTGCAAGTTCTCATTCCAAATAGTGCGCAAATCATGAACTTTCGACAGATTCAATTCCTTGAAAATTTGTACCAAAAGTCCATCCTACTCGTTTGCATGCTTAAGCCCATCAATACTTGGTCCCAATCTTGGAGCTCATGAACAATACAAGGTTTCCCAATTTCCACAATCTAAAATACAGTAGCGATTTACAGTGGAATCAGCTATTTTGAGCTCCAACTGTACAAAATCTTCAGATGCCACATGAAAACCATACACTATGGGGAGCCAAGATATGGAAACAGGCAACGGCAACGAATGGTTAGGGGGCCTCCATCTATACAAAAATTGATACTGCGAGCGCTTTATGATTCACCAAGCAACCGTGCAAGCTATACCAGCTGCTCATTTTTCAATCTTCATGGAACCAGAATTGTTGGTGCTGCCCTCTGCCATTGCGCCACCAGGGTTGTAGTTCAAGTGAGGAATGTTCTGAAGTCCTTCCCACATGGCAGGTATCTGGTTAACTGTGGAGATGTCCTGAATTGTTGTCCCCTGCAAAACATCTGCAGGATTGGAAACATTACACAGCATTTCTGGCTGCATGATTCCTTGGTTAAAATGAGCAACGAGGGCACTTGATCCTGGGTCGACTCCGTAGAAAGCAAGATGTCTATCTTGTGAAAGCATCATTTGTTTCGATAGAATCTGCTCAATATCAAAGCTAAGCTCAGGGTTGACAGTTGCGAGTTTCATCGACAAAAACTCAACTTGACGTTGTAGTGACTGTACATAATTGATTATCTCATCAAGCATGACTGCCTTACCAGTGATCTTACTGCAGCCTGGGACAAGATCTTGAAGCAGCTTCATCCTCTCGCTTATCTTTTTTCTCCTCAGTCTTTCTGCAAGGCTGTGGCTATTAGTGGCTTGGCCTCGCTTTGCCCGGACATGAACATAATCTTCTTTAGTACCATCACCATCAGAAGAATCTTCCTTGCTTTGCATTTTGGAGCAACTCTTTTGGTTGTCCTCCTCCATTGATATCCTCTCTTGCTGAGATGAAACCTCTGTCTGTTGATCACCAACATTTTGTATCCTGCTACTTGCTGATGGGTTCAACAAGGCAATGTGATCATCTATTCCTTTCCTTCTCTTTGCACCACTGCTATGATCATCACTCAGTTGGATATTTTGACAGAATGTGCCGTTGGGTGATCTATAGAGTCCCTCTCTATCCTCTAACACCATGGGGTAAGCTTGAAATCCAAATGCGCCACTGTTATACCCCATCTTCTGATGCAGTGCAACAGAATCCCAGTTCACCTCCAAGAATTCTTTGCCACTATTTGGACCAGGACACTGATCAGATTGCTGGCCTGAATACATCTCCAACTGTTCAGGAAACACCTATCTTTCCCTGTTCCCACATTACCACCGTTGTAACTTGAAGAAAAAGAGTGTTTGTTTCACTGGATGTAGAGCTTCCAGACAAGTTAAGAACCAACCAAGAAGTGCGTCTCCTTTTGGATATGGCTAGGCAGCTAGTCCCAAGAAGCTCAAAAGAGCACCTAAAACTGCCCCAAAATTGAACTAAAAGAACCTATTTGGATGATGAAATCATCAAGATATCACACTCAGGGGCACACAGAAAGATGAACGCCCCCTCATGGCCTCACAGAGGATTTGATCACCCTATAAAATCTCACCATTACCTAGGAAAATCACAAATGTGAAGCTAAAGAAAGAACACTAGTACTGCATCAGCAAAGCTTATAAAAGGAAGCAGAGTGGGCAAGCTACTAGTTCAGACTGAACTTGGCGAGGGCGTGAGGCCATTTGAATGCACAGATAGCTGGACTAGGATCTGTGAGACATTACTAGGGCGTTGAAGCTTTCCGAGAGCAGAAGGAAGGAAAGCAACAACCTTTGACTACTCCACCGTGGTATAAAG

Explanation	CPC Score
noncoding (weak)	-0.890307

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0232400.2	3	29776443	C	G
Osa03LNT0232400.2	3	29776575	G	A
Osa03LNT0232400.2	3	29777520	G	C
Osa03LNT0232400.2	3	29777772	G	C
Osa03LNT0232400.2	3	29778017	T	C
Osa03LNT0232400.2	3	29774720	G	C
Osa03LNT0232400.2	3	29775136	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0232400.2	osa-miR6252	Translation	5.0	15.891	1	23
Osa03LNT0232400.2	osa-miR6253	Cleavage	4.5	13.026	1	22
Osa03LNT0232400.2	osa-miR6255	Cleavage	5.0	13.024	1	22
Osa03LNT0232400.2	osa-miR171i-3p	Translation	5.0	16.141	1	21
Osa03LNT0232400.2	osa-miR1861e	Cleavage	5.0	18.397	1	22
Osa03LNT0232400.2	osa-miR1861g	Cleavage	4.5	18.397	1	22
Osa03LNT0232400.2	osa-miR1861k	Cleavage	5.0	18.397	1	22
Osa03LNT0232400.2	osa-miR1861m	Cleavage	5.0	18.397	1	22
Osa03LNT0232400.2	osa-miR1863c	Translation	4.0	11.813	1	24
Osa03LNT0232400.2	osa-miR5073	Translation	5.0	17.486	1	23
Osa03LNT0232400.2	osa-miR5146	Translation	5.0	17.631	1	24
Osa03LNT0232400.2	osa-miR5150-5p	Translation	5.0	21.529	1	24
Osa03LNT0232400.2	osa-miR5157a-3p	Cleavage	4.0	13.521	1	24
Osa03LNT0232400.2	osa-miR5157b-3p	Cleavage	4.0	13.521	1	24
Osa03LNT0232400.2	osa-miR5073	Cleavage	3.5	16.257	1	23

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0232400.2	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0232400.2	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0232400.2	3	nan	Morphological trait	Shoot/Seedling	RZ403	RZ630

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus