>Osa03LNT0232600.2

GGGCAATACAGTTGATATAGATCATATTTCGTACGCATTAGTTACAAATAGGAATGTGCTGTCTATAAATAACATCTAGAGATCCTACAACATACATCCGAAACTTCTCGATGTTTTTTTACAGACAAACGTATTCTGAAGCCCCCGTTAATAACAGTTTGTGGTCATCCACAAAGAGGTATGAAAAAATTCCTACAATGTTTGTCAGCCTCCAAGTTCATAATCATTAGCCAAAATCAGCCAAGAGGTCAAGCTTCCCGTATTGTGCTGTGTCCAACTCAGTATGTGTGCCGAGATCTAAAATTAATTATCTCGGGATTCTTTTGGTAGTATCTCACGTCTCCGTAACCTTAAAGGGAATCTCCGACCTCGGGAGCTTCTTGAGAAAAACTTCAATACCTCATCAATCAAAATTACAGGAAAGGAGAGATAAAGAACGACTTTCCACTCAGCCCAAGATAATGGAGACACTGAGAAAAGAGCTGATAGAGGTTCAATATACAGAACAGATATGTGAAGAAGCATTGTCAGGACAATCGACCCAACAAGCCACAGGTTACTCCATGGATGAATGGCAAGGAGAGATTGATTTTCACTTAGGTTATTTAGGGCATTAAACATCTCAACAACAACAAGAACAGTCATTGAAACAGTTGATGGATGGCGATCCTCAAAGATGCTGCAAGGATATGATGTTTGCCTAGTTGAACATGAATCAAAATTAACCAATTCTGAGTATGGCAACCTAGGACCATCTTCAGAATAAACAAACCACCAAACGAACCCCGCTATGGTAGCAAGACCAACGTAGGCACCAATGATCAAATAACGGAAAAAGAGCCATCCGTTAACCACAGCTTCATTAACCTTACGAGGCTTCACTGTCATGATGTTGCTATCAGGCTTGTTGAAACCAATCGCAGTTGCAGGCAACCCATCGGTAACCAGGTTTACCCAGAGTAGCTGGACAGGTACAAGTGTGTCAGGCATCCCAAGCACAGCTGCCACAAAAATGCATACTACCTCCCCAATATTTGATGAAATCATGTACCGAATGAACTGCTTGGTGTTATTATATATGGCCCTTCCCTCTGAAACAGCTGCAACAATGGTAGCGAAGTTGTCATCAGCCAATACCATGTCTGAAGCACTCTTTGCAACTGCAGTTCCTGATCCCATCGCTATTCCTATATCTGCTTTCTTCAGGGCAGGTGCATCATTAACGCCATCACCAGTCATTGCAACCACTTCATTGTGTAACTGCAAAGCTTCAACAAGCATCCTTTTATGAGAAGGTTCCACTCTGGAGAACAGAACCATCCTTTGCAACGCATTTGCCTTTTCTAAAGGAGGAAGCCCTTCAAACTCTGATGCTGTATAAGAATACCCTGTAAAGTCCTCCAAATGCTCAAAAGCACCTATTTGCCGACATAGGGATTCTGCAGTGGACTTGTTGTCTCCAGTAACAACTATAACACGAATACCTGCAGACATACAAGAGTGGATAGCATTCCGAACTTCTTCTCGTGGTGGGTCAAGCATCCCAACCAATCCTATAAATGTGAGATTTGCCTCATCATCATAGCTAAGGCTTTGTTGACCTTCTGGCATTCGTTTTAATGCTAATGCTAAGCACCTTAGGGTATCTTTTCCTGCAAAACTTTGGAATCTAGCTTCCAATTCATTACGAATGTCCATAGTCAAAGGTACAGAAGAACCATCATCATTGCACAATATATGGGTGCACCTGGCCATTACACTTTCAGGGGCACCTTTCGAAAACATAATCTCCTGTTGTTTTCGACTGCAAAGGACGCTCATCATTTTGCGATCTCGGGAGAACTCTAGAACGGATATCTTTCTAAACTGATTTTCCCAGTAACGGTTGCAGTATGATGCGCGCTCATGCTTGGTAAGCATGTTCAGGGCTGAAGGCATTGAATCAAAACCAGGAAGGCCAACCTTCTCCACCAGTACACGCAGAGCAACCTCAGTGGACTCCCCAATTTTCTCGTAACATTTTTTATCAGGATTGTATTGTAAAGTGGACTCATTGCAAAGAGCTGAACACATTGCTATATGAAGGAGACATGAGGATTGAGGAGGAAACTCCAGCTGCAATCCACCAGCATCATATATAAAACCATCAGGAGCAAATGTAGTTCCACTAATGGAGTACTCATCAGTTATTGGCCTCTGGTGCACAGACCGCACAACACAGACCTTTGATACGGACATCATGTTTGTTGTAAGAGTACCTGTTTTGTCACTGCAAATGACTGTTGTGCATCCTAATGTCTCTACAGAGGGAAGAGACCTAACAATGGCATTCAGGCGAGCCATTCTCTTGGTACCAAGAGCTAAGCACGTTGTTACTACAGCTGGGAGACCTTCTGGAATGGCTGCAACAGCAAGGGCAACAGCTACTTTAAAATAATGAATGGCGCCCCTAAGAAAACCACCATGAGAAGGATCTCGGAAGTGTCCAATATTTACAACCCAAACAAGAATACAGATCCCTGCTATCACCTTTGCCAAAAAAGTACCAAATTCATCAAGTTTCTTCTTCAATGGGGTCGCTTCATCTTCAGTTCTCAGCATTGCATCACGTATACTTCCCATTGCAGTATTAGAACCAACACCAATAACAACAGCTCTTGCTCTACCAGCTACAACAACAGTACCTGAGAAAAGAATGTTTGTCTTGTCTTGGTAGACAGCATTCATTGTTGAAGTTGATTCAAGCTCTTTAGCCACTGAACAGCTTTCCCCTGTCAAAATTGCCTGGTCAACACGCAATTGATGACTTAACATTTCAATTGTTCTCATGTCAGCCGGAACTTTGCATCCAACTCCCACTTCTACAATATCTCCAGGGACAAGCTCCGTTGCTGGAAGTATAGAAAAGCAACCATTGCGCAGCACTGTTGCAACATCAGCTTGATAAGCCCGCAACTCCTCAAGAGCTTTCTCAGCATTTGTTTCAGTAATCACACCCACGGCTGCATTTGCTGCTAATATCAGAAAGATGACAGATGGTTCCAAAAATGCTGCCAATCCAGTTTCACCATTCATTCGAGCCAAAAGGAAGGATATCACAGCAGCTGCTATCAATATTTTCACGAGTAAATCATCAAACTGCTTCAACACTAATTTCCAGAAGGGGGTACTTTCTTCTTGGGGCAGCTCGTTTTTGCCGTAAAGCCTAGCATGCTGCTCCACCTGCTCATCGGAGAGGCCCTTGGTTGGATCCACGCCGAACGCCGCGAGCACCTCGGCCACGGACTTGGCGTAGGCGTCCTCCATGGTCGACCGCCGCCAGCGACGACGACGATGACGACGGCGCGCGCGGCCTCC

Explanation	CPC Score
noncoding	-1.02817

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0232600.2	3	29891268	A	T
Osa03LNT0232600.2	3	29891697	T	A
Osa03LNT0232600.2	3	29891702	T	C
Osa03LNT0232600.2	3	29893299	C	T
Osa03LNT0232600.2	3	29893549	G	A
Osa03LNT0232600.2	3	29894744	C	T
Osa03LNT0232600.2	3	29895214	C	T
Osa03LNT0232600.2	3	29895409	C	T
Osa03LNT0232600.2	3	29895939	G	C
Osa03LNT0232600.2	3	29896204	A	T
Osa03LNT0232600.2	3	29897446	T	A
Osa03LNT0232600.2	3	29899127	A	T
Osa03LNT0232600.2	3	29899426	G	C
Osa03LNT0232600.2	3	29899942	T	C
Osa03LNT0232600.2	3	29900752	C	T
Osa03LNT0232600.2	3	29901484	T	C
Osa03LNT0232600.2	3	29902613	T	C
Osa03LNT0232600.2	3	29903714	G	A
Osa03LNT0232600.2	3	29908978	C	A
Osa03LNT0232600.2	3	29909300	T	G
Osa03LNT0232600.2	3	29909771	G	T
Osa03LNT0232600.2	3	29910702	A	C
Osa03LNT0232600.2	3	29910932	G	A
Osa03LNT0232600.2	3	29904648	T	C
Osa03LNT0232600.2	3	29894712	C	T
Osa03LNT0232600.2	3	29902713	G	A
Osa03LNT0232600.2	3	29904357	C	T
Osa03LNT0232600.2	3	29908117	C	T
Osa03LNT0232600.2	3	29908649	C	T
Osa03LNT0232600.2	3	29908656	A	G
Osa03LNT0232600.2	3	29908792	C	A
Osa03LNT0232600.2	3	29904265	T	A
Osa03LNT0232600.2	3	29906559	T	C
Osa03LNT0232600.2	3	29907031	C	T
Osa03LNT0232600.2	3	29907407	C	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa03LNT0232600.2	DTM_#DNAt_MULE_japo_Os0378	Chr3	-	29907952	29908936	984

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0232600.2	osa-miR5536	Cleavage	5.0	18.356	1	22
Osa03LNT0232600.2	osa-miR435	Cleavage	4.5	17.87	1	20
Osa03LNT0232600.2	osa-miR1426	Translation	3.5	14.013	1	21
Osa03LNT0232600.2	osa-miR1869	Translation	4.5	15.844	1	24
Osa03LNT0232600.2	osa-miR2870	Cleavage	3.5	19.186	1	21
Osa03LNT0232600.2	osa-miR5071	Cleavage	4.5	16.107	1	21
Osa03LNT0232600.2	osa-miR5495	Translation	5.0	16.762	1	21
Osa03LNT0232600.2	osa-miR5502	Cleavage	5.0	12.358	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0232600.2	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0232600.2	3	nan	Morphological trait	Shoot/Seedling	RZ403	RZ630
Osa03LNT0232600.2	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus