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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0232700.1

CCCAGAAGAAAAAAAAAATCCCAACACACCATCTACACAAGTTTTTGGCACATGCACAAACCCTTCACTACACAATACACATACACGTACATTTTTCTGACACGGAAAAAAAAATCTCAGAGTAGTACTTGTTACAACCACACAGGAAAATACACTATGCACATACACATACGTATGAATACGCCCCACTACGTATACCTGTACGTATAGGTGGCCCGGGGGTCCCCAGTATTTGGGGTAGCTACACGCACAGCTCAAAGCAGTTGTCCATCTCTTTGCACTGGTCCGTCCGTCCGTCCCGTTTGGGACCAGATACCCTCAACTCCAAGCTAACCACCTGGTCCCCCCGGTTAAACCAACCAGAATCACACCAACAACTCCCAAGATCTCCTGTGACAACCCCCTCTCTCCTTCCACCCCTCTCTCCATCCTATCCTTCCCACCCACTCTATTTTTTCCTCTCGTAATAATAATACGCTTTTCGACGAACCGAATGCTAGTACATCGCTGTACAGTACGGTATACAGCCGCTCTCTTAATAAAAGTAATACTGTTTTCGATGGCTATGTTAGTATACACGGTGATCGTCGATCATGGTAATACGTACGTTCGGTCCTGAAATATACATACATCGTCGAGCGGTCAAGCGCATACGTGTGGGTATGTTTGGGCGCGTGGGGAGAGTGTGATTTTGTGTATGGCGGCAGAGAGGCCCACGTCGGTGGCGAGGGGGATGCGAGTGGCAGCGAAATGCTGTCGGCTTTAATAATTTATGACGACCGGGGGTATGGGCCAAGCTAGCTAGCTGCCCGGCCGGCCGGATGGCCTACCACGGCGGCAAGTTGTTGCACCGGCGATTCCCGTGGGAATCGACCGATCGATCTCCTCATCTCCCTCTCACAACTCCATCTCACTGCTCGCTAGCTGCTGCATGCACCACACATCCCTTTCTCATCTTTAGTAGTATTTTCCATTATATCTCTCCCTTTTGATTAATTCCCCTTTGCCACAGGAGAAATCAAGATCGAGGTGAGAGACAGACAAGGTAGGAGCAACATGATCATGAGATAGATACATGTGTAATTAAGCTAGGAGATAGCTAGGTTAGATATAAGATACTAGCTAGCTAGTACTAGCATATTCATTTTCATACATATACATGTAAGCTACAGAGATAGATGAAAAGAAAGGGGGGTGTGTGAGAAGAGGAGATTGGTGTAGCAAGCTTTATTAGCAGCATGGATGGATAGGAAGGGGAATGGAATGGAATGGAATGAAATGAAATGAAATGTTCTTTCCTGATGGGGTTGTGGGGTGGGGCATGTACTATAGCTTGCATGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCAGAAGGGAGCCCTAGTGTTGTCTTCAAAGGGCCCTAAGCTAGCTACTGATGAGTACTACTACTACTACAGACTCTGAGGAAGAAAGTGACTAACTGGAGAAAGATGTTGGGGGCATGCATGCATGCAGGTGCCCAATGGCCAGTTGGAAATATATATAATCACCACAGTGATTGGGGGGATGCTTGGGGCCGAGGTCCCTGGTCCTTGCATTGGCTGGGTCGGTCAGATGAGGCAAATTGTTTGCATCAGTGGACCTTGACAGTATGTGCTGTTGTAGCTTGGTGCCCACAGTTGTGTGGTGGTGTCTCCCCTGCTGCCTCTACCTCTCTACCCTACTACCCCAAGAATTGACAATTCAGAGCTCTATTTTACATGCTGCTGTTCAAGTGTTCATCCATCCCTCGGTTTTCCCCTTTTTGATCTCCCTGCCATTATGAATTTATCATTGTGCCTGAAGTGTCCATGCATAACTGTAACTCTTTTTTTTACTGCATTCAGTTATACTATTATTTAAGCATTGGTATGCCAAGAAATTAAACTGGAATCAAATACCTGGCAAATTGAAGTCAGTAACTGTCACCAGAGTTACTGCAGACATATCTAACTGAAACTCATCTTCAGATATATCTAATCCGTTT

Coding Potentia
Explanation CPC Score
noncoding -1.26263
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0232700.1 3 29984131 A G
Osa03LNT0232700.1 3 29984143 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0232700.1 osa-miR5543 Translation 5.0 6.808 1 21
Osa03LNT0232700.1 osa-miR1428a-3p Cleavage 3.5 10.084 1 21
Osa03LNT0232700.1 osa-miR2099-5p Translation 2.5 21.658 1 22
Osa03LNT0232700.1 osa-miR2867-5p Cleavage 5.0 23.972 1 22
Osa03LNT0232700.1 osa-miR2871a-5p Translation 5.0 19.469 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0232700.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0232700.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0232700.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus