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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0232800.1

GCAATGTCATATGCATTTCACATTCCACAAGTCTGAAAATGCAATATCAGTATATCCATCCACTAATTCAATACATATCCAAAGTCTCAAATTTCATCTTCCTCCTACATCGAGAGCAACAGCAGCACATCTGCAATAGCTTCACAGCAGCAGCATCGCAATGACCAAAAGCACAATAGCAACAGCACAACGGCCAGAAGCACAACAGCACCAAAATAACATCTCACAATCACAATGGTCGCAAGTTCAGTGTCACCAAAATATCATCTGGAACCTAATTGAGTATGAGAGCTTACTGCTGAGCATCTGATGATGCAAACTTGCTGCCAATCAAGGAGCGAACGAAGCTTTGGATTTCACTTCCTTGCTGCCTCAGCTTCTCAGTTTCTTCTTCATTCTTCCTTGCTGCCTCTTTCTGGTCATCTAATTGTTTCACCATTTAGCAAGCCGAAAATTGCACGGATATTTTTCATCCACTGCAGCTGGCAGCTCTTCCCGCATAGGAGCAACCGCACACCAACAACATCCAGCCACATCCATCTCATCAGCACTCGAACAGCAGGGAGGACGCTGCTCATCGGCACTGGGGCGGCGCCATGGAGGAGGTTGCTCGCCTCGCCTATCACCTGCTCCCTACACCCCGTGTGCTACAGTGGGTGGGTGCGCGGCTGTGAGCGGAGAAGGGCAAGGTGGTGGCCATTAGTACGAGCTCACCAGCATGGGGTGGCCGATGAGGCTGTTCAGCACGGCCATCTTGCCCGCCCCGACGTTGCCGAGCGCGACGGCATTGACGAAGGTGGAGAGGCGGCGTGGGGTGGAGTCGTCACAGGGGTCGTCGTCGGCCAGCAGCGACGCCACCTGGCGCATCGACTCCGACAGCTGCGTGAGCTCCTCGACGGCCTCCATCGTCGCCGGTGTACTCGCGTCCCACACCCTCTCCCCGCGCCGGATCTCGACGGATCGGGGGCTCCCGCCGCTGCCGCGATGCTCCCCACCCATTGAGCTACCCAAACTCTTCACGTTCGGCAATTTCTCCGACGCAGTCCATGGGAAAGAGGAAACGACATGTGGGGAGGAAGCGGACTGGATGAGGCGAAGCAGAAAGTGGAGGCGGTGAGGACAGAAGAAGATGAGGGATTGAGCGGACTGCCGCGCCGCTCCCGCCGCCCGCCGTGGCCGCTCCCGGCCCCTCCCAAGCGCGCCGCCGCTGGATCTGGGAAGAGGAGGGCGCCGGCCGTCGAGCCCGCCGCCGTGGCCGCTGCAGACGTCGACCGGCCCCTCCCGAGCGCGCCGCGCCGCTCCCGCCCTCGCCGTCGTCAGTGTGAGAGAGAGAGAGAGAGAGAGGAGAGGAGAGAGAGCGGGAGACT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.980193
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0232800.1 3 29976658 T C
Osa03LNT0232800.1 3 29976781 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0232800.1 osa-miR6253 Cleavage 4.0 13.51 1 22
Osa03LNT0232800.1 osa-miR156b-3p Cleavage 4.5 17.118 1 21
Osa03LNT0232800.1 osa-miR156c-3p Cleavage 4.0 23.871 1 22
Osa03LNT0232800.1 osa-miR156g-3p Cleavage 4.0 23.871 1 22
Osa03LNT0232800.1 osa-miR528-3p Cleavage 5.0 22.157 1 21
Osa03LNT0232800.1 osa-miR395x Cleavage 3.5 16.8 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0232800.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0232800.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0232800.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus