>Osa03LNT0232900.2

AAATCAAACACATCAAGGACAATGTCAACCGGCCGTGCCGGCCAAAAGATGACAGATGACAAACGTGTAGACGCATGTATGATCGATCGATCGATCGAGCTGTTCATCAGCCATCAGGGCAAGCAGAATGGTCATCAACAACTACCAGAGGAAAGAAGCATCGGCAAGCCATTGGCCCATGCCTACCTTCTCCTACTTCTTCTTCCCTTACGTATTGTCTTGCAAATTGTATTTATAATTTTTTTGTCCGTGTGATGCATGCTTGCCTTGCCTTTTCTCCGTGTGAGAGAGAGCAAGGCGAGATATGGACGTCTCAACCATTTCTACCTATCATTTTCTTCTTGGGTTTGCGTTCGCCATGTCGTTGCTGCCGGCTATTAATTCAGCTCGATGTCTGCATATTTCCATGAACATTTTCAGCCATCTCTTGATCAGTTTACACTTGCGGAGCTGTTGGGCAAACCATTTATATGAGAGGATATGATCTGGTTGCATCCAAGCGTTTTTCTTGGGCTGGGAGAGTGCGATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGCCAATATCACAAGCTTGCCTGGCTTAATTACATGTAGTAGTGTGAGGATATTGGATTCTTCCACAAGATTGAGATGTCCAACTTGATGTGATGATCTGGAAAAGAAGAAGCAATCTGAAGGTTGTCCAACTTAAGGTTTGATGCCTTAGATCAAATGGCCCAGCATCTGTACCTAACCTAGATGATATGACCTAAAACCTGCAACGAGCTGTCTGAATGTCTGATCGAGAAGCAATCTGAAGCCTCTTCTTTTTTCAGATACTATAATGCCATTGACCTGACTCTTCAGGTTGTGCTATCTCCAGGCACCATGTCCTCTCAAGGCCCATTTAGAAAGGCCAATCCACACGGTCCAAGAAATGGCCCATTAAGGGTCTTGATGCAGAGGATGAAGATGAACAGTGATCGATATGCTCAAATGCATAAGGGAGCCGTATTGATTCTCTGATTAAAAAAATATCCAACGACTTGGATTTAGGCCATGTTATATTCACTGGATTATTGAAAAAGATTATTTACTGTATTCTTAAAAAATATGTTTTTTTTCCTCAAAAGACTGTCTTCTATTGTACTGTTTAGAGCACTTGTTTTAAGTTTGGAGTATTTGTAAAGCTTATTTGTTTTTTGAACGGAAGCCAGCACTAGAGCGTGCTATTTAATTGAATATAGATGAAGAAAAATACAACCCCTAGGAGTAAGGAAAAACTGTACAGAGTTACATGTCGTCTATGAAGAAAAATTCCCCAAGTTTTTGCCTCCTCCTTTATTTTTATCATAAGTCGATAATTCGCTAGTAATCTTAAATCAAACTGGGCCTTATTCATAAAGCAGTGTTTTGAATAATATTAAAATCAACTGCTTTTGCTACATCATCCATGATCATCTCGTAGTCACTTAACAGCTACAGAGCGAGCCGTGCTGCCCTGTCTTTAGTGCCTTGTTTGAAACAAGCCCTTGATGTTGTACAAGCTAAAGTCTCACTCGATCGACAAATATAGTGCAGAAGATGACAGACTATGGGTCTGAAAAAACTGATGAGTACTTCATCAACAGCAATTCACCCAATGAGCTTTGATAGTTTCATGAAGGCGATCATGATGAAGTCCCAAATGCTGTCTCGTTAGCTTTTCGATCAGTGTGGCTGAAAGAGAAGTTGTCCGGGAATCGCGATGATACGTACTAATTTGCTACAAAAGGATAAAACAGTGCTTCTGACAACAATGGCGTCTTCACTGTCTGTGCACTGTAGATGAACCTGCATGATCATTTGTATATATACAGTTTGACGCATCAACGCATGGATATTTGAGTAATCGAATCTTGAGGCTTTAAGTTTCTTTTAATGGAAAAAGAATGCAAAAATTTTGTTGCCAGTGGTTTTTAGTTAAGCTCTTTCTCATCCTGTGTTTGATAGTGATATGCATAGAACGGTAGATCTTGTTGCTGTATTTGACACCGCAATTCGATTCGATTTCAAGACTCAGGTCACATCTCGCATTAATATGTGTAATCTTGCCCAC

Explanation	CPC Score
noncoding	-1.02967

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0232900.2	3	30027778	A	G
Osa03LNT0232900.2	3	30027635	G	A
Osa03LNT0232900.2	3	30028194	T	C
Osa03LNT0232900.2	3	30028948	C	A
Osa03LNT0232900.2	3	30029787	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0232900.2	osa-miR166j-5p	Cleavage	5.0	16.041	1	21
Osa03LNT0232900.2	osa-miR1442	Cleavage	4.5	22.011	1	20
Osa03LNT0232900.2	osa-miR1861b	Translation	4.5	18.704	1	22
Osa03LNT0232900.2	osa-miR1861f	Translation	4.5	18.704	1	22
Osa03LNT0232900.2	osa-miR1861g	Cleavage	4.5	18.704	1	22
Osa03LNT0232900.2	osa-miR1861i	Translation	4.5	18.704	1	22
Osa03LNT0232900.2	osa-miR1861l	Translation	4.5	18.704	1	22
Osa03LNT0232900.2	osa-miR1861n	Cleavage	3.5	18.704	1	22
Osa03LNT0232900.2	osa-miR1880	Cleavage	5.0	16.861	1	24
Osa03LNT0232900.2	osa-miR2876-5p	Cleavage	4.5	9.873	1	21
Osa03LNT0232900.2	osa-miR5523	Cleavage	5.0	10.692	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0232900.2	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0232900.2	3	nan	Morphological trait	Shoot/Seedling	RZ403	RZ630
Osa03LNT0232900.2	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa03LNT0232900.2	osa-MIR171f	100.0	127	1	127	1.47e-62	235

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus