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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0233100.1

CCAATTAGATTGGCAAAAAGCTTTTGCTTGTTAGCAATATGATCACAGATTCACAGTTTACACATGAAGAAGTCTATGGGCATGTTAGGACATCATCTCTTTGATCATGCAACATTGCAAAATGGGCAGTGATCCCTTACAAAAGAGGTCCCATTGCCAAATACCACGATTTACATCGAAAATTGCAATTGTTTGGATCTCAAAGTTCTGTATATCTTCTGTCTAGGATCTGCAAAATTCTCTAGTAAGCTTCACCCCAGCACCTACATCATTGTTCTAGTATGGATCAAAGTTGTAAATACATCTCAGTTTAACGCTATTTCACGATTCAGATAGGAAACACCGGTTTCACAGTAGAAGAGCTCTGTTGTTTAATGACATCCTCAATTGATGGTCCTTTTTCATGTACAAAGTTGACAGATTCTGACAGCCTATTCAGAAGGTTTACTAGTGCAATGACCTCATTTCGCTGCAGCTGGAGTGATTGATTCAAATGGTTCTCTCCATCAACAGAGAAAAGAATCTTCAATGCAGTACCGAGACCAAGAACTTGGAGCTTTCCCCATAATCGACACTTCTCACATCCAACACAATCCATAATTGCACTGATATTTCTAAATTGCTTCTGAATCTCCTGCTTTAGCTCAGGGCCATTTTCACCTTGCCAGAGTTTTGCTTCATCAAATGGTAACGGGCACGCTGATCTTAATTTGGGGTTGTAAAGCAATTGCTTCACTAAAGACTGTGTTTTCAAGTCCTCTTCAGGATTGCCGGTGTTGTACTCAGCCTGCTCAAGGTAATCTGCTGCCTTTGTCACAGCCCGAAGAACAAACAGGTAAGTGAAGTACAAATTTTGTACACGCTCGGGGTACTTCAGAACACGGTCATACAGCAAAGGAAGATTATGTCCCCACAAGTTGGCAGATTCATCTAGAAGATAATCATAAGCAATGTGTACTGAAATTGAGGAGTGCAACCCTGAAATTAGCTTGTACAGTGCCTTCTTCTCCTGACACATTTCTTCAGACGGATATTTTGGACAGTTTTCTTTGTAGACAGAGTCCCATATTCTGCGAGCAGAATCACCAGTATAGCCAGTGTAACGTTCAGGGTTGAGTTGAAGATTCACATAAGTCATCTCAGCATTATCAGTCTCATCGTCATATGTCCATGGATTGTCGGTTTCAATCCATCCTTTGAAAACCTTGGCATCAAGGGTTCTATCAACAGTAGCCTGTGGTTTTCCTTCCTGACAGATCATACTATCTGGAGAAAGGCCACTGTAAGGCTTCTTGAATGGCTCAGGAAACTCATTCTCTGGGCACTCACAGACACTACAATCCCTAAGCCGACACATTCCATCATCAGGCCAGAAAGGGCAGTCACACCACAATTTAACCTTGAAGTACCTGAAGAAGGGCAAAGTGACGAGCTCCTGCAGGATCGGGTGCAGCACCTCCTCGTTGATGGCGTCCACCGTCTCGTAGTCGCAGCAGCAATCCTCCACCATCCCCGTGTACTTCCTCGTCCCGGGGCAGCCGCAGTCTCCGCCACGCGAGGACGAGGAGGCCGCCGGGAAGCTGCGCGAGCTGACGGCGACGGCGAGGAGCGCCACGAGCAGCGCCCCCACCCCCGCGGCCGCCGCC

Coding Potentia
Explanation CPC Score
noncoding -1.0336
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0233100.1 3 30062661 C T
Osa03LNT0233100.1 3 30062670 G A
Osa03LNT0233100.1 3 30062698 A T
Osa03LNT0233100.1 3 30062740 C T
Osa03LNT0233100.1 3 30063219 A T
Osa03LNT0233100.1 3 30064486 C A
Osa03LNT0233100.1 3 30065987 T C
Osa03LNT0233100.1 3 30062673 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0233100.1 osa-miR166a-5p Translation 5.0 22.817 1 21
Osa03LNT0233100.1 osa-miR166c-5p Translation 5.0 22.817 1 20
Osa03LNT0233100.1 osa-miR166e-5p Translation 5.0 22.817 1 21
Osa03LNT0233100.1 osa-miR398a Translation 4.0 15.75 1 21
Osa03LNT0233100.1 osa-miR1863a Translation 5.0 10.027 1 24
Osa03LNT0233100.1 osa-miR1872 Cleavage 4.0 14.504 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0233100.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0233100.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0233100.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus