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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0233200.1

GGTGTAATTTTGTCTGGCATTACTTCAGTTTTATACAACTGTTGTAACTCAGTTGAGCAGCCGTAGACATGGTGGATGTACACATGCACATGGGTAGACCTGTAAAGGCTCCCGATTACATAAGGATCCAAAAACTGTATTCAACTGGACTACAGGAAGAACTACTTCAGGAAGAAACAAAAACTGATCTATGTTCCTCAAAACAAAATCTACGGCGATTATGTCAATCGCAACTTCTCTCATGTAACATTTCTCTAGCCTGTGCATGTTAAGTGGATGAGACAATAACGCAGCAATGAAGATGAATGTTGCTTCGAACTCCAGAAGGTGGGATTGGCTCAGTATTTCATGACGCACATTCTTTTCTTGTTTCTCCTGGGAACAATTGGAAATATTATGTCTTCTCCTTTGCTGCTTTGAATAATTTGATCACATTTTCATACACCACAAATGTAAGGGAAGCTGCCGGAAGGTTTTTGAGCAGATTCGATGTGATGCCCCTGTAAAATCCACGGACACCTTCATGCCTTGCAGTTTCTTTCACTACATGCCAGCTATCTTTGTACTTTGGAGTGCCATCACTACCAGGTCGTTGCTGCAAGCGTGCTCGGATGACCTGGTAAGGATAAGTAAGCAGAATGGCAGTTACTTTCGAACCAGCCCCAAGTGCCGCATAATCAATGGAATTCAAGGAATCATCGCAGCTTCTGTTGTCTGTTCTTGTCTGTCTACTTTTGGCAAATATCAAAGCTTTGCGAAGTTCCTCATAGGCCGTGAACTGTATCGCTCCATGAGTAACCAGCAAAAGCCCAGGTCCAATCCCTCTGTAAAGCGCAAGCCATCCCTCCTCTTTCAGAATAGTTCTCAAAGCATCTGGCCAGAAAATCCAGAATATCGTGAAGTATGATGACTAGGCGTTTGTAATTGCAGTCTTGTTTTAACCAGCCATATAGGGTTTGTGAATAGGCAAACCAAAGCACCTGCTTCTGCAGCTGAGACAAGATGGTGAACTGGACGGAGCTGATCATCTTTCCCTTGTAAGTATCTTTGTTTAGCTCTGTTATAAAAAAAGAAATATAGCCCCCAGGAAACAGTTGATCCAAGAACTGCTGGATAAAATCCCGCATAAAGTCCTCTCAGACCCTCAGATCGCGCGATGGTGTACACAGCGTGCGCAGTGTTCCTGTACGGCGGCAAGTCGTAGCATCCCCTCCCGCCGCTCACTTGGAAACGGGTGCGGACGACGTCGAGCGGGTGGAGGGTCGCGACGGTGGCGAAGCCGGCGGCCGCTCCTGCGGCGGCGTTCTCCCACGTCCAGGCCTCCGCCGACGCCGCCGGCGAGGCCCCCGGCGGCATCTCCGGCGTTTCGCGCGGTGGACTTCCTTCTTCCGCTTCTCTTGCTCGGGAGCGGCGGCCAC

Coding Potentia
Explanation CPC Score
noncoding -1.11524
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0233200.1 3 30086327 C A
Osa03LNT0233200.1 3 30088926 A T
Osa03LNT0233200.1 3 30089648 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0233200.1 osa-miR5544 Translation 4.5 16.44 1 22
Osa03LNT0233200.1 osa-miR530-3p Cleavage 4.0 22.948 1 21
Osa03LNT0233200.1 osa-miR814a Cleavage 3.5 16.864 1 22
Osa03LNT0233200.1 osa-miR814b Cleavage 3.5 16.864 1 22
Osa03LNT0233200.1 osa-miR814c Cleavage 3.5 16.864 1 22
Osa03LNT0233200.1 osa-miR1428e-5p Cleavage 4.0 17.833 1 22
Osa03LNT0233200.1 osa-miR1428f-5p Cleavage 4.0 17.833 1 22
Osa03LNT0233200.1 osa-miR1428g-5p Cleavage 4.0 17.833 1 22
Osa03LNT0233200.1 osa-miR5149 Cleavage 4.5 14.509 1 22
Osa03LNT0233200.1 osa-miR5149 Translation 5.0 20.802 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0233200.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0233200.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
Osa03LNT0233200.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus