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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0233300.1

GCTGATCTTTGTTAGTTCTGTTGCCTTATGTACCATCCTAAAGTCAGGAGTTCCTGAAAAATAACCTACGTATCAATTATACACAAGCGTCTGAACATTTTGTCACGAGGTAGCCATGCTATCTTCTTCTTTGGTTGGTGGCAACACGTCTGCCTTCTGCTCCTGCTCTGGCACCATCTCAGTGTCAGTTTTCATAGTGGTTTGATTATGCTCAGCACACAGATTTGCTTTGCTGTCATCTGTATCACCCGTTTTACTCAGATCAGCAGGATGCTGCACAGTCATTTTGGGGGCATTCAAAGGACTTCTTAGGGTGCCCTTGTTTGCCCACATTAGGCCACAGGCATTACAGAGGGACCTTGGACCAGCTGGCCCACGACGCATTGCTGGAGTAAGCCTTGAGCTGATGCCACAATTTTGGCAAACACAGTTGACAACTAACTCACTGCGTTTCTCGGATATGATCATCCTCGCCATTGGCTGTGGAGCCGCATGGTGCAGAAGAACATGAACCATCACCAAAGTCTGCCCTTCCAGCAAACTGGCCTTTACGTCGTTTCATCTTTTGAGCAACCTCCTTACGAACACTGTATCTTATTTTCTTATCAAAACATCTTTCCTTCCTCTTCTCACGAAACCTCATTAAGGAAGCAACTCTTCTGGCAGCCACAGTTGTACTCTTTTCATCGAATGTGGTAGGTACAGCCATGCTTACTAAACCAGGAGGCATGTCAGACCCTCCAAGTACCAATAGAACAGCCTGAACCTTTTGGGGCGGGACGGGGTCGAAGACGTAGACCTCCCCCTGGTACACGAGCGTCAGCTGCTCCGACGCCGCGCTCAGGAGCGCCTCCGCCGCCGCGGACTCCACCGCGCCGTCGCCGGCGGCGCCATCGTCCGCCGGGGGATCGCGGCCGTCCGCCGGGGGCTCCGCCGCCATCGGCTCGGGATCGGACGGTGGAGATGGGCCGCGGAC

Coding Potentia
Explanation CPC Score
noncoding -1.02968
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0233300.1 3 30095950 C T
Osa03LNT0233300.1 3 30096130 G A
Osa03LNT0233300.1 3 30096868 T G
Osa03LNT0233300.1 3 30097226 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0233300.1 osa-miR5793 Cleavage 5.0 5.213 1 21
Osa03LNT0233300.1 osa-miR168a-3p Cleavage 4.0 24.21 1 24
Osa03LNT0233300.1 osa-miR169i-5p.2 Cleavage 4.5 18.203 1 22
Osa03LNT0233300.1 osa-miR5076 Translation 4.5 15.298 1 22
Osa03LNT0233300.1 osa-miR5152-3p Translation 5.0 18.904 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0233300.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0233300.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0233300.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus