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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0233400.1

TTAAATCACCTTGGATATTACAAAATCAAGGAGTAAATGCAAGCATGTAACCAATGAGTATTTAGATAACTCCTTGGGTTCTAATAAAATATTTAATTTATCTCTTCGCTTAAGTATTAAATGCACAAATACTACAAATAGGAACAACTTATTTAGAAAAACTCAAAAGTAAAATAGGTGTAACTTTTATGGATGGAGGGAGTATTATATTATTATATTATTGGGCCAACAAGCTAGGAAGTAAATTTGCATGCATACTGAATCTTTGTATTCTCCCCGATTCCAATAGGAACCTTTCCTTCAGCCAGCAGTTCTCCTCTTTCCAGATCAGTCTCATAGAAATCAGCACCAAGCATTACTGTATCCTTGAGGTGCACATTGGAACCTATCCTAGAACGGATTCCAACAACACTGTGCTCTATCCTGCAGCTATCCAAGAAACATCCATGGGAAATGATTGAATCAGGTATCACATACCTTACTATTATTGATCATAGATGGCGGTAAGTTTCTCCGTGATGTGTACATTGGTTTATTAGCATCATAAAAGCTGAATCTCGGTGGCTGCATAAGTGAATTCAAAAATGATCAAAAGTTACAGAGAGTTTTCATTTGATCTGTTTTAAAAAGAAAATTTCGTACCTATGTAGTACTATCACCATCATGATACTATACGTAGAAGTTAATAACATAAATGAATACGGTGGGGAAAAGGAAGTCAGGAGTTGCTAGAAGGATGGTGAACATAAAGTATCAATTTGCAGTGTGTACAGTTACATATTTATTAGAGGGATATAAACTGCAGGAATACGGATAAAATGGCAATTTTGTATTAGTAAAGCATACCTGTTCAGCAAGAGAAAGATTGGCTTCAAAGAATGATTTTATAGTTCCTATGTCTTCCCAGTAATCATTGAAAAGATATGCCTTTACATTGATTTCTTTTGCTGAAGCAGGAATGAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.944786
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0233400.1 3 30100409 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0233400.1 osa-miR5525 Cleavage 5.0 13.671 1 22
Osa03LNT0233400.1 osa-miR5512b Cleavage 4.0 17.229 1 21
Osa03LNT0233400.1 osa-miR1429-5p Translation 4.5 14.416 1 21
Osa03LNT0233400.1 osa-miR1852 Cleavage 4.5 11.753 1 21
Osa03LNT0233400.1 osa-miR1864 Translation 4.0 15.56 1 24
Osa03LNT0233400.1 osa-miR2095-3p Cleavage 4.0 19.063 1 20
Osa03LNT0233400.1 osa-miR2095-3p Cleavage 5.0 12.472 1 20
Osa03LNT0233400.1 osa-miR2918 Translation 4.5 12.535 1 21
Osa03LNT0233400.1 osa-miR5491 Cleavage 4.5 11.61 1 21
Osa03LNT0233400.1 osa-miR5512a Cleavage 4.0 17.229 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0233400.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0233400.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0233400.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus