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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0233500.1

AATAACATCAGGTAAATACGACGGGCATGAACATAGAGGCATGCTCAGCATTCATCGACCATTGAGAAACAAGCAAAACTCGCCAGCAGCTGATAACCAACACTGAAAGATTGACTACAGGATGATACCCGAACATCATCGAAAGACTACAGGATACCTTTGGGAAAAAGGCATTATGCTCACAACCAAACCTCGCGCTCAGGGAAAACAACAAACCAAACATGAGGGCTCCCAACACATAAATAGATAACTTTTTTCCCTGATATTTAAATAAAGCATGCACTTAAATATCACCAGTAGCCCATGGATTCTCCTCACCCATCTGCTCACTGCTTGGATCTTCAGTTTCCTCGTCCACCACGGCCACCCATTCTTCCCCGCCCGCGGCCGCCATATCCCCTTCCACCAGGAAAACCGCCACCTCTGCCTCGTTCGTACCCGCCACGGTAATTCCAATTGCCCCTCCCGCGCATGCCACCCCGTCCTCGGTTATATCCACCATTTTCTTGGTAGTTTCCATATCTGCCTTGGTTGTAGCCATATCCACCACCACCATATCCCCCTTGATTATCATAGCCACCATATCCTCCCTGATTATCATAGCCACCATACCCACCTTGGTTATCATAGTACCCACCACCTTGGTTGTACCCACCTTGATTGTTTCCATATCCACCATAACCACCATAACCTCCTCTACCCCAACCCCTTCATAATCAGGTGGTGGTTGACGAACTTGGCGCTGTGGTGGTGGTGGCGCCTGCTGGAGGCGCGGCTGTTGCCGGGGTTGTTCAACATAAACTGGGGTTTGGTACCCAGGAGAGTTCTTGTCCAGATCTCTGGGAGATAAGGTAATTGAAATCATCGAAACATGACGAGTCATCTCTAGTGGAACAAGGCCTTCTTCAATAGGTTCCCAGACATCAGTGATGCTGACAGAACTGATGTTGGTATCTTGATAAAGCCCAGGGACTCTTTTCTTGATAATTTCTGCAACAGCAACAGATTTGCTGATTGCCTGCCCCATGGCCTTCAGAACAATCTCTTTAATCCTCCGATCCTGGAGGAGGGACGTGGCGTAGGAGACGTAGTTGCGGATGAGCCCCTGCGCGGTGATGCGGATCTCGTTCTCCTCGATGGCCGACTCCGGCCGCGGCCGCTCCACCCTCTGGTACCGGTCCATCTCCGCCGCCCCCGCGCCTGCGCCTGCGCCGCCGGCGCCGCCCGCTCGTCGCCGCCGCGGCGAGGTGGTGGAAGGGATTGCGAAGCGTGAGGAGGAGGAGGCGGCGGGAGGGGAGGGGAGGGGAGGGGAGAGGGGAGCTAAAACCCTAGGAGAGGCGGAGCCAACGATACGGACGGCAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.898036
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0233500.1 3 30119651 G T
Osa03LNT0233500.1 3 30121213 G T
Osa03LNT0233500.1 3 30121226 A G
Osa03LNT0233500.1 3 30122855 T C
Osa03LNT0233500.1 3 30123077 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0233500.1 osa-miR5820 Cleavage 5.0 16.328 1 21
Osa03LNT0233500.1 osa-miR419 Cleavage 3.0 15.648 1 21
Osa03LNT0233500.1 osa-miR815a Cleavage 4.0 22.24 1 21
Osa03LNT0233500.1 osa-miR815b Cleavage 4.0 22.24 1 21
Osa03LNT0233500.1 osa-miR815c Cleavage 4.0 22.24 1 21
Osa03LNT0233500.1 osa-miR2118b Cleavage 5.0 23.245 1 22
Osa03LNT0233500.1 osa-miR2118c Cleavage 4.0 23.245 1 22
Osa03LNT0233500.1 osa-miR2118n Cleavage 5.0 23.245 1 22
Osa03LNT0233500.1 osa-miR2118q Cleavage 4.0 23.245 1 22
Osa03LNT0233500.1 osa-miR2925 Cleavage 5.0 11.137 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0233500.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0233500.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0233500.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus