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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0234000.1

ATCTCTTTGGAATTTACTCTTTTTTTTTCCTATTTATTGTTCTTTTTCATCATCCCAATTTTATACTGATGAATTTTGGTACAAGAGATTAATCATACGCAAGGTTGCTCTAGCTCAAATTTACAGTTTGGGCAAGGTTCACGACCCGACGAGGCCCTTGTGCCGTGCGTACGCAACAATGGAGACGAACATGAAGGCACAGAAAAGTCCTGACACGAGAACCACCCATTTGAATACGTATCCATGGTTGTCATTCCAGGTGTATGGAATGTTCATACCAAAAATTCCGGCAACCAATGAGTAAAGCGACAGGCATACGGTCCCAGAACTCAAGAATAGCTCTAGCTGAATTAACTGATTACGGTGGTTGTCAAGCTGGATATTAATGTAATCTTCTGTGTCATCAATGTACTCTCTCAGCGTTGTCAATTTGTTTAATGTGCCATCAATTTGCATGAAGTATGCCTCCAACAACATCTCTAGCTCTTCAACATCATTTTCATTTCCATGTATAGTTGGGGCACTGGCTCTGCTTGCTCTTGATATTTTTGAACCAATAGTCGGGGATGCTGGGAACCAATTTGGTCCACCAGAGCCACTGACAGGGGAAGCTGCCCCAGCCAACTTTCTGGACAAGTAAAGATCAGCCATGTCATCGTCATCGTCCAATAATTGTTCAAGTTCATCTCTCACCTTCTGAACCCTCGCATTCAATCGTGTCATACCACTTTTTAACTTCCGCACCCTATCCAAGTTGCGGCTGCTAATCTTGGATGTCAGTTCATCCAAAGCTGGGTAAGCAGCACTCTCCAACTCAGTAGTGCGTGCACCAAGAAAACTGCAAATGGCTTCCAAAGTAACCTCCAGTGCGCGGAATTCAAAGGGAGATTCATCTTCTTCAGCACCTTCCACATCATGTTGAGTGGCACTTGAAGGTGCAAGTCGTCTCCGGAGCTCCTCTACTACAGGAATCACATTATCATCTAATGGATCCCGGAGCAAAACCTCTTCAGCAGTAATGATCGCCTTGATATGCTCGAGATTGAGGACGATGGCGCGCTCGCGGCCGAGGATGGTGGATGGGTAGGAGAGCAGCGGGTCGAGGATGCGCAGGTCGCGCGCGTTGATGTCGACGCGGTGCATGATGGCGTACTTGTCGGCGTCCAGCACCCGCTCCTCCCCCGCCGCGTCGAACAGGATCCAGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.770924
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0234000.1 3 30453936 C G
Osa03LNT0234000.1 3 30454983 T C
Osa03LNT0234000.1 3 30456508 G A
Osa03LNT0234000.1 3 30456718 A C
Osa03LNT0234000.1 3 30456922 A T
Osa03LNT0234000.1 3 30457317 T G
Osa03LNT0234000.1 3 30457796 T G
Osa03LNT0234000.1 3 30458518 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0234000.1 osa-miR5796 Cleavage 5.0 19.881 1 21
Osa03LNT0234000.1 osa-miR530-3p Cleavage 4.0 16.166 1 21
Osa03LNT0234000.1 osa-miR535-5p Translation 4.0 9.097 1 21
Osa03LNT0234000.1 osa-miR1857-5p Cleavage 4.0 14.133 1 21
Osa03LNT0234000.1 osa-miR5497 Translation 5.0 23.395 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0234000.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
Osa03LNT0234000.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0234000.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus