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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0234100.1

GCGCTTCCAATCAAACCCAAATGTTTAGGCCTTGCGACCAGTAGTATACACATATACCATTGGTTCTCTCTCTGAAAGAACCATTTTACAGTTGCAAGATGCAATGTTCTTGCTTATTTGAGGTAGTTTCAGCTTTCTAGGCCGCAACCGCCTCGCGCAGTTTGCTGCTGTCCGCTGATGGCGTCAAGCTGTCGTAGTATTCAACAAGGACCTTCCAGCCACCCGGGCACATGAATCCGTCAGGGGGGCTCTGGCAGTTCTTGGCAAGAGTACGCATCTTTGTGCCAGAGATGAACAGGAAATCATCTTTCCTTGATGGATCGAAAAAGTCCATTTTCTTTTGCTTTGTGTCATATGCAGCCACCTTGAAAGGAAGGATATTGAGCTTCTCAAGCCCAGGAGCCATGCTCAACACCTTTTTCCCATGATCAGCATCATACAGGTCCCTCTTTTCAGTTGGGTGGCCCATACCAGCAGGATCTCTTCCAACTATGTAGAAGTTTGCACCAGCATTTATACGAGCCTTAGCATGCCATTGCACTTCAGTTGGCCCTGCATAATGCATTGGAGAGGGGAAGATTGCAACGACAGTTGATTCTGGGTTGAGGACACCTTCCTCAAGAACCTTTTCATGCTGCTTCATTCTCCAACTAAGAGGCACATCATCTGCTTTTGTGAATCCTCCCAATGGATGAAGCAGAAGAACAGGATTTTTGTAACCCATCTCAAGAAGGCGTTTGCGTGTATCAGTCATGAGCAAAGCATGTCCATTGTGTACAGGATTGCGAAGCTGAAACGCGAATACCGCATCAGCATTGCGTCTGGCAAACTCTTCACGCAGCTGGGCTGGAGACAAGCGATACTGATCAAGACCATCATTGTACTTGATTGGTTCTATAACCTCCAAGTCACCACCAATTAACCAATCACCAGCATTTGTAATCGCCTCATCAACATAAGGCAGCCCAGGTGCAGTTGTTCCCCATGTCCGTGCAATCCTTTCTTCTTTGTTATGCTTGTAGATCTCAATGTCGCTGAGGACGGCGAGGGGGCGGTCGCCACCCTCACCGGCGCCGGCGCCGGCGGCGCCACCACCACCGCGCGATCGCTTCCCCTCCGCTGCGCCAGCTGCGGGAACATCGAGGCGGCGAAGGCGGCCTGCATCGCCATGGCTACCTCGATTTGCTCTC

Coding Potentia
Explanation CPC Score
noncoding -1.0844
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0234100.1 3 30532506 G A
Osa03LNT0234100.1 3 30532853 A G
Osa03LNT0234100.1 3 30534078 A G
Osa03LNT0234100.1 3 30534581 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0234100.1 osa-miR5819 Cleavage 5.0 14.248 1 21
Osa03LNT0234100.1 osa-miR437 Cleavage 5.0 15.954 1 21
Osa03LNT0234100.1 osa-miR1847.1 Cleavage 5.0 15.029 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0234100.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0234100.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0234100.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus