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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0234800.1

GCCGGATTTCACACCAAGGAATTGGAGGTTGAATCTTACAGTTCACACAAGGTATTTGACAAGAAAAGTTTGGTGCTAAAATTGGTTGGTAGATATGGCGTACAAGATACCATCACTGTGCCAAGCGCTAAATCAGGCCCAAAGCTGTCCATACATAAGTACATTCTCAGTGTGTTTCTCCAGAAACGGCATACTGAGCATCTCAAGCAAAGGATAGGAAAATACTTGAGAATTGTACCAAATACAGGAAAGAACACACCTCATCATTCTATAAAGCAACATATAAAACCATACAAGAATGACTAGGTGGCCAGCTTTTCTTCTCTGATCATACGCGTACCGCACTAATCATCTTCCAAATGTGCCAAACTGAATCACGCTAAGCATTACGGCAAAGACCAGTTTCCTGCCTTGAACTTTCTGTAAAAGGTGGATTTTCTTGAAACAACAAAGAACACAGGAATTGCAGGGATGATGAAGTCTTTATGCTGCAGCACTTCTTGAAGAGTTTTTCCCTCTTTTACATTGATCCACTTCACAGAACCCTTATCTGATGATGTAATTGTGCTGCTCTTGCCATCATCATTTTCTCCATCTTCCTCATCAAGCAGGCTTTCAGGAAGTGACTTTGAGTCCATAGTGCCTTCCAAAAGAATTTTCAATATTTCACTTTTGGACAGAACTGTGCCAACGCCAGCCTGATAATATAACTCAACAGCATCCCGTGTGTAAGCGTGTTTATCATCCCATGGTAATGGTGGAGAACTTTCTGAGAACATGACATCAAGGTGGGGCACGAAAGTATCTGTCTCCGGAAAATCCTCGATGAAGTCACTCGACATGACCTCCGGGTAGAGCAGAAGAACTGGCCAGTGAAGCACACCCTGCTCATCCAACTTCGGCTTCTTTACACCGGTAAGCTCTTGATATGCTGCCTTCCCAAGCTTCAACCCCCTCTTCTCTATAGCGGCAACAATATCCTTCGCAGCGGACACGGCCTGCGCAACCTTGGCCCTATGACGATCTTGCTCACTCTGTTGGGCGTCCACTTGTGCGAGCAATTTCTTGAGCTCCTCATTAGCAGGGTCCTGCTCGATCCCCCGCCGGCAGAAGGCCGCCGCCTCCGGCAGCAAGCCGAGAGCAATCGCCGCTTTCGCCGCCCGGTAGTACGCCTTGACGTTGGAGGGAGAGAGCTGGACGGCACGGGCGGCGTCGTCGAGGGCGCGGCGGTGGTTGCCGAGGAGGAGGTTGACGTGGGCGCGGTTGGCGAAGAGGACGGAGGCGTCGGGGGATGGCACCGGCGGCGGCGGCAGCGGCTCCATCTGGGCAATGGCCTTGGTGTAGCAGTCGACGGCGTCGGCGTAGTGGCTCCGGCCCATCTTGACGAGCCGGTTGCCCTTCTCCTTGTACTCTGCCGCCGCCGACTCCTTGATGGCGGCGATGGCGTCCAGGTCGGCCTTCTCGCTCTCCGTCAGGGGGCCTCCCGCCCCGGGATCCATCAGCAGCGCCATGGCCGTCGGCGTCGAGCCGCTCGCTCTCCCCGCTGGGCGCCGCCTCCTTCCTCGCCGCTCTGGTCTTCTCCCCCGCCCAGCGCCGCGCCGCGCCGCTTCCGAAGCTTCCACGGGCTTCTGGGGTTCTCGCTTTCGCT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.750328
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0234800.1 3 30903930 C T
Osa03LNT0234800.1 3 30904877 C T
Osa03LNT0234800.1 3 30906314 A G
Osa03LNT0234800.1 3 30906426 A G
Osa03LNT0234800.1 3 30906566 A C
Osa03LNT0234800.1 3 30907102 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0234800.1 osa-miR171f-5p Cleavage 4.5 14.126 1 21
Osa03LNT0234800.1 osa-miR171i-5p Translation 4.5 21.339 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0234800.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0234800.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0234800.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus