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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0235300.1

CCACACCACACGAATTACTTCTCTGATCTCTATTTCTGCATGCTCTTCCACTCGCTCCATTGCTGAGCACACAACCCTAGGAATTCACTTGGGCAAATTAGCATCAGTATATAGTCCTCATTCAACTTCCTCTTGCCTTTGCCACAACCAGGAACCTGAACATGACGGTCAAGGTATCTGAAGAACTCAGAGCCAAACAAACGCTGCGGAACAATCATATCTGGGGGAAAAGAAAGAGGGCTGGACTCGAGCCTCATGCTTCTCATGTCGAAGCGGCACATGTGGTGCACCGCAGGTTCCCCACATTCGCTGATTGGCCCCAACAGTGAACTGGACAGCGTGAAGTAGAGGGCATTGTCTTCATCTTCCTCCTTCCTCAGGAAAGGGTAGACTGGCTGAGTCTCCGGCAATCCATTCTTCTTGAAGTCCTCCAGCTCCCACAGACTTCCCAGGCTGAGCTCCACATCCTTAGTCCATCCCCAAGAGGCCGTGTCCAGCGTCCACACTGTCATGGTCTTTTCATCCACCGGCATAGAATCTTCGAAGGAGATGGAGACGAACTTGATCGAGCTCCCAGAGGTGCAACCCATGGTCCGGTATATCTCCGCCGGCGCAGTATCCGGCATGTCCAGGGCGTCACAC

Coding Potentia
Explanation CPC Score
noncoding -1.06383
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0235300.1 3 31064352 C G
Osa03LNT0235300.1 3 31064688 C T
Osa03LNT0235300.1 3 31064697 A C
Osa03LNT0235300.1 3 31064772 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0235300.1 osa-miR6246 Translation 5.0 23.469 1 23
Osa03LNT0235300.1 osa-miR528-5p Cleavage 4.5 13.584 1 21
Osa03LNT0235300.1 osa-miR1424 Cleavage 5.0 15.121 1 21
Osa03LNT0235300.1 osa-miR3979-5p Cleavage 4.0 17.161 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0235300.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0235300.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
Osa03LNT0235300.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus